Transcript Information: R_Transcript_78257.p1


Annotated TAIR IDAT5G03940.1
Annotated Gene Namechloroplast signal recognition particle 54 kDa subunit
Annotated Gene Symbol(s)FFC, 54CP, CPSRP54, SRP54CP
Annotation TypeOrtholog
Chromosome Positionchr5:1060265-1063257 | Reverse length=564
E-Value4e-312
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.495727114579
Replicate 218.043695670256
Replicate 321.196686004773
Condition 2: 8 Hour
Replicate 115.558726685229
Replicate 219.410487709362
Replicate 316.166278208782
Condition 3: 24 Hour
Replicate 115.584205947973
Replicate 210.721306405142
Replicate 313.033824145149


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78257.p1 GENE.R_Transcript_78257~~R_Transcript_78257.p1 ORF type:complete len:576 (+),score=135.43,SRP54|PF00448.18|1.4e-75,SRP_SPB|PF02978.15|1.2e+03,SRP_SPB|PF02978.15|1.6e+04,SRP_SPB|PF02978.15|3.8e-24,SRP54_N|PF02881.15|4.4e-19,SRP54_N|PF02881.15|1.7e+03,SRP54_N|PF02881.15|1e+04,CbiA|PF01656.19|4.9e-06,CbiA|PF01656.19|2.9e+03 R_Transcript_78257:158-1885(+)
ATGGAAGCACTCCATTTTCAACTACCAATAACAACTTCCGGCCAAATGTCTTCATCAAAACATTCATATTCCTCCCTCTCTTCAGCCATAAACCTCCCCACTAAAACACCCAACAATTGTTCTTCCTCCTCATTCACTGGCTCCACCCTCGCCATCGGTTTCTCGTCCTGTAGCTCCTTCACTAGGGAATTATGGAGAGCCGTGAATTCAAAGGCGATTAGCACTGTGAGAAGAGAGATGAGAGGATTAATTAGGGCTGAGATGTTTGGGCAGCTTACTACCGGCCTTGAAGCTGCTTGGTCTAAGCTCAAAGGCCAAGAGGTTCTGACAAACGAGAACATTGCAGAACCCATGCGAGATATAAGAAGAGCTCTGTTAGAAGCTGATGTGAGCCTTCCGGTTGTAAGAAGATTTGTTCAATCTGTAACCGACCAGGCTGTCGGAGTTGGAGTTATTAAAGGAGTGAGACCGGATCAGCAATTAGTCAAAATTGTGAATGATGAACTCGTGAAGCTAATGGGGGGAGAGGTTTCTGAGCTTGTATTCTCAAAATCTGGACCGACAATAATATTACTTGCAGGACTTCAAGGTGTTGGAAAGACAACAGTGTCTGCGAAGTTGGCTTTTTATCTTAAGAAGCTGGGGAAGAGTTGCATGCTTGTTGCGGGAGATGTGTACAGACCTGCAGCAATTGACCAACTTGTGATTCTCGGACAACAGGTGGATGTGCCTGTTTACACGGCAGGTACTGATGTTAAACCTGCAGAGATTGCTAAGCAAGGCATCGCAGAGGCCAAAAAGAAAAATATTGACGTAATCATAGTGGATACAGCTGGGAGGCTTCAGATTGATAAGGCTATGATGGATGAGTTAAAAGAGGTGAAGCAGGCAGTGAATCCTACCGAAGTTTTACTTGTTGTAGATGCAATGACTGGTCAAGAAGCAGCAGCTTTGGTCACCACTTTCAACCTGGAGATTGGTATTACGGGTGCCATCTTAACAAAACTAGATGGAGATTCTAGAGGTGGAGCAGCTCTGAGTGTCAAAGAGGTTTCAGGAAAGCCAATCAAACTTGTAGGGCGAGGGGAACGGATGGAGGACCTTGAGCCTTTCTATCCTGATCGTATGGCAGGACGCATCTTGGGGATGGGAGATGTTCTTTCTTTTGTTGAGAAAGCACAAGAAGTTATGAAACAAGAAGAAGCAGAAGAACTTCAGAAAAAGATAATGAGTGCAAAGTTCGACTTCAATGACTTCCTGAAGCAGACTCGTGCAGTTGCACAGATGGGTTCCATGAGCCGTGTTATCGGTATGATCCCAGGCATGGCAAAGGTGACTCCCGCACAAATTCGAGAAGCAGAAAAGAGCCTGAAGTTCATGGAATCAATGATTGAAGTGATGACTCCAGAGGAGAGAGAGCAGCCAGAACTCTTGGCTGAATCTCCTGCAAGAAGAAAAAGAATTGCCCAAGAGTCGGGGAAAACTGAGCAGCAGGTTAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGCACGCATGAAGAATTTGATGGGTGTTATGCAAGGGGGGTCTATACCAACCCTCAGCAATCTCGAGGAGGCCCTCAAGTCTGAGGAAAAGGCTCCTCCTGGAACTGCGAGGAGAAAGAAAAGAGGGGTGTCAAGAAAGCAATGTGCAGATTCAGGTTCATCCAGACCAAGTCCTCGTGGTTTCGGGTCAAGTAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78257.p1 GENE.R_Transcript_78257~~R_Transcript_78257.p1 ORF type:complete len:576 (+),score=135.43,SRP54|PF00448.18|1.4e-75,SRP_SPB|PF02978.15|1.2e+03,SRP_SPB|PF02978.15|1.6e+04,SRP_SPB|PF02978.15|3.8e-24,SRP54_N|PF02881.15|4.4e-19,SRP54_N|PF02881.15|1.7e+03,SRP54_N|PF02881.15|1e+04,CbiA|PF01656.19|4.9e-06,CbiA|PF01656.19|2.9e+03 R_Transcript_78257:158-1885(+)
MEALHFQLPITTSGQMSSSKHSYSSLSSAINLPTKTPNNCSSSSFTGSTLAIGFSSCSSFTRELWRAVNSKAISTVRREMRGLIRAEMFGQLTTGLEAAWSKLKGQEVLTNENIAEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVIKGVRPDQQLVKIVNDELVKLMGGEVSELVFSKSGPTIILLAGLQGVGKTTVSAKLAFYLKKLGKSCMLVAGDVYRPAAIDQLVILGQQVDVPVYTAGTDVKPAEIAKQGIAEAKKKNIDVIIVDTAGRLQIDKAMMDELKEVKQAVNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMKQEEAEELQKKIMSAKFDFNDFLKQTRAVAQMGSMSRVIGMIPGMAKVTPAQIREAEKSLKFMESMIEVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRARMKNLMGVMQGGSIPTLSNLEEALKSEEKAPPGTARRKKRGVSRKQCADSGSSRPSPRGFGSSN*

Click here to download the sequence:
Link to NCBI Protein BLAST