Transcript Information: R_Transcript_78339.p1


Annotated TAIR IDAT5G20320.1
Annotated Gene Namedicer-like 4
Annotated Gene Symbol(s)DCL4, ATDCL4
Annotation TypeOrtholog
Chromosome Positionchr5:6859571-6869068 | Reverse length=1702
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1468962652412
Replicate 22.3597050618921
Replicate 32.8512313865906
Condition 2: 8 Hour
Replicate 13.9650826621521
Replicate 24.8639984669648
Replicate 37.370321653716
Condition 3: 24 Hour
Replicate 15.2157918535449
Replicate 23.4515480680722
Replicate 34.7610717143704


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78339.p1 GENE.R_Transcript_78339~~R_Transcript_78339.p1 ORF type:complete len:1655 (+),score=319.56,Ribonuclease_3|PF00636.22|5.4e-24,Ribonuclease_3|PF00636.22|1.1e-23,Ribonucleas_3_3|PF14622.2|2.2e-08,Ribonucleas_3_3|PF14622.2|3.8,Ribonucleas_3_3|PF14622.2|2.4e-16,Dicer_dimer|PF03368.10|3.2e-24,Dicer_dimer|PF03368.10|2.2e+02,Dicer_dimer|PF03368.10|3.1e+03,Helicase_C|PF00271.27|3.1e-17,DEAD|PF00270.25|2.3e-15,ResIII|PF04851.11|5.7e-14,DND1_DSRM|PF14709.2|5.3e+02,DND1_DSRM|PF14709.2|1.3e-12,dsrm|PF00035.21|1.6e+02,dsrm|PF00035.21|0.07,dsrm|PF00035.21|0.0041,SNF2_N|PF00176.19|9.8e-06 R_Transcript_78339:277-5241(+)
ATGGGTGACGATCGCCTTGCAATTACTGACATTGGCGATTCTTTGGACCAAACGGAAATGGGCCCTACTTCTAACGCCTCCATTTCTAAACAAGACCCCCGCAAAATTGCTAGAGGGTATCAGTTAGAATTGAGCAGAAAAGCTCTGGAAGAAAATATGATCGTGGTTTTAGAGACTGGCTGTGGAAAGACCCTCATTGCTATTTTGTTGATGAGCTATATGGATCATTTAATTAAGAAGCCCCAAAAGCAATTGTGTGTTTTCCTTGCTCCTACTGTCCTCTTAGTTCATCAGCAAGCTGAGGTCATTGAACAATTTACTGATTTCAAGGTTGGAATCTATTACGGTGATGCAAAGCATCTAAAGACTCATAGTGCCTGGCAAAAAGAAGTTGAGCAATATGAGGTTCTTGTCATGACCCCACAAGTGTTATTGCATAGCTTATGTCATTGCTTCATCAGAATGGAGGCAATTGCTCTGTTGATATTCGATGAGTGTCATTATGCGCAAGTTGAGAGCAATCATCCATATGCAGAAATAATGAAGGTATTTTATAAAACTGAAGGGGCTAAAATTCCTCGTATACTTGGCATGACTGCGTCCCCCATTTGTGGAAAAGGTGCTTCTATCAGTAGTCTTGAAGCTTTACTTCATGCCAAGGTGTATACTGTTAATAACAAGAACGAACTGGAGACTGTTGTTGTATCTCCTTCTGTTGAAGTGTATCACTACAGGTCAAATACAGGATCATTATCAGGTTCCCACCACAAATGTTTGGAAAAACTAGAGGAGATTAAGCGTCAGTGTATATCTGTGCTTTGCAGGACTGCAGATGATCCCAGCAGAGTACGAAATATCAAGAAACTTCTCAAAAAACTGCATAATAATATGGTGTTTTCTTTAACCAGTCTTGGTTTTTGGGGTGCATTGCAAGCCGGTCGGATCCTTCTGAATGGGGATGGTTGTGAGAGAAATGAGCTAATAGAGGCCAAAACAAACTCTGGTGATGACCTCATACATAGAGAATACCTTGCTCAGATTGTATCTCTATTAGAATCAGAATGTGCGGGAGATATTGTTAACGGCATCACATCTGATTTATCTTGTACGAAGGTTCTAAAGGAGCCGTTTTTCTCTCACAAGGTTTTGCGTCTTATTGGGATCCTGTCAAACTTCAGGTCAAGGCCAGACATGAAATGCATTATATTTGTGAATAGGATCATAATTGCAAGATCCCTGTCATATGTTCTGGGACAAATCAAGATTTTGTCACCCTGGAAGTGTGATTTCCTAGCGGGAGTTCATTCTGGATTGAAACGTATGTCCAGGAAAACCATGAATATTATCCTGGAAGAATTTCGATCTGGAAAGCTGAATTTGTTGGTTGCTACTAAAGTTGGTGAAGAAGGACTTGATATTCAAACCTGCTGTCTTGTAATACGGTTTGATCTTCCTGAGACTCTTGCAAGCTTTATACAGTCCAGAGGCCGTGCACGAATGCCTCAGTCAGAATATGCATTTTTGGTTGACAGTGACAGTGAGAGGGAGATGAATCTAATGGACAGTTTCAGAAAAGATGAAGACCATATGAACATGGAAATTAGAACTAGAAAATCCAATGAAGTTATTGCCAATATTAAGGAAGAAGTGTATTCAGTTGGTTCAACTGGTGCTACAATCAGTACTCAAACCAGTGTTTCATTGCTCTATCATTACTGTTCAAAACTGCCCCATGATGAGTATTTTAACCCCAAGCCAGATCTATTTTATGTTGATGATGCAGAAGGAACCATATGCCACATTATTCTTCCTTGTAATGCTCCTATCCATCACATTGTAAGCTCACCTCATTCTTCAACTGAAGCAGCCAAGAAAGATGCGTGTCTAAAGGCATGCAAAGAACTGCATCGAATTGGTGCTTTAACTGAGTATCTACTGCCAGAACAAGTTGATATGGAAGACGAATCCGGTTCTGAACTTCATGATTCTGATGACAGTGAAGATGAAGATACACCATTTGAACTGCAGGAGATGTTAATTCCTGCTGCACTAAAGGAACCATGGTCTGATGTGGACAACCTCGTGTGTCTTAACTCATACTTTATAAGGTTTATGCCTAAACCGCATGACAGACAGTATAAAGAATTTGGCCTTTTCGTCAAAGCTCCTCTGCCTAGTGAGGCTGAGACAATGGAAATTGATCTTCATCTGGCCTATGGTAGGTCTGTGTTGACAGATCTTGTTCCTTCTGGAGTTGCTGAATTCAATGAAGAGGAGGTGCTGTTGGCTCAGAATTTTCAGGAAATGTTTCTCAAAATGATTCTTGATCGGACAAAATTCATGAGTAGTCATGTTCCTCTCAAGAATTGCAGAATTACTGAATCAGATTCACCAAGCTTCTACCTATTGCTTCCAGTAACTCGTCATGAATATGAAAAAACAATGTCTGTAGATTGGATGATTATTAAGAGATGCTTATCTTCTCCGATTTTTGCACCTCCTACTCATGCAGTTGACTGTCAGATTCCTTTGGATGAATACTTGCATCTTGCTGAAGGACCTACGTCTGTGAATTTGATTCTGAATAGCTTAGTATATGTTGCGCACAAGAATTCATTCTTTTTTATTACAAAAGTCCTTCCTGACAAGAATGGGTACAGCCTCCACAACAATTCCACAAGCCATGTAGAGCAGTTGAGTGAAAAGTTTCAGTTGGTGCACCCAGGGCAACCTCTGCTACAAGCTAAACAGCTCTTTTGCTTGCGCAATTTATTGCATGATCGCAAAAAAGGAAAATCTGAATCAAATAATCTAGAAGAGCACTTCTTTGAACTACCACCTGAGGTATGTCAATTGAAGATAATTGGTTTCTCTAAGGACATTGGAAGCTCATTATCCTTGTTGCCATCTGTAATGCATCGCCTGGAAAACTTGCTTGTGGCTATTGAATTGAAGCATATGCTGTCTAAGTCATTTTCTGAGGGCTCAGTTGTTTCTGCTGAACGTGTTCTTGAAGCAGTAACTACGGAAAAATGCCTTGAGCGCTTTTCATTGGAGAGGCTTGAAGTTCTTGGTGATGCTTTTCTTAAGTTTGCAGTGGGGCGCTACCTTTTTCTTAAGCACGAAGCTTTTGATGAGGGACAGTTAACAAGGAAGCGTTCTAGTGTTGTAAACAACTCAAATCTTTGCAAGCTGGCTATTAAAAATAAATTGCAGGTATATATACGCGATCAAGAATTTGATCCTAGCCAATTTTTCGCTCTGGGTCATCCATGTCCTACCATATGCACCAAGCCGGAAGAAAAGTCTATTCATTCTCAATCTGAAGCTAACTTGAGAAGGGGAGCTGATAATCGTCAAGTGAGGTGCAGTAAGAATCATCACTGGTTATCCAAGAAAACAATTGCAGATGTGGTTGAAGCTCTTCTTGGTGCTTACATTGTTGACAGTGGTTTTAAAGCTGCAATTGCTTTTCTTAGATGGTTTGGGATACAAGTTGAAATTGATGTTTCTCAAGTATTACGTGCTTGGACTGCAAGTGCCACTTTCAAGTCAGTTGCAGATTGCATCGATATTGCTACTATTGAAGGTTATTTAGGTCATCAGTTCGCCCACAAAGGCTTACTTCTGCAAGCATTTATACACCCATCATACAATCGGCATAGAGGAGGTTGCTATCAGAGATTGGAGTTTCTTGGTGATGCTGTGTTGGATTACCTAATCACATCCTATTTATACTCTGTCTTTCCTGACCTGAAACCTGGCCAATTGACTGATTTAAGATCATCCCTCGTGAACAACACGTCATTTGCCAGAGTTGCAACAAGTCGAATGTTGTACAAATTCATTATATGTGAGAATAGCAACCTATCTGATGCTATTAACAAATATGTGAACTTTACTGGAAAATGTGCTTCAGAAAGGGATATACTTGAGGAGCCACCATGTCCCAAGGCCCTTGGTGACTTGGTGGAGTCATGTATTGGCGCAATTCTTCTTGATGCAGGATTTGATTTAAATCTTGTGTGGAAGGTGATGCTCACCGTTCTGGACCCTATCATGGGCTTTTCTAGTTTGCAGCCTAGTCCTGTAAGAGAACTTTTCGAACTTTGCCAATATCATGGTTGGGATTTACAATTTCTGTCATTAAGAAAGAACAGAGTTTTTATGGTGGAGGCTGTAGTGCACGGAAAACATTTTCATTCAGCTGCCTCTGTGACAAATCGGAGTAAACGAATGGCTAGGAGAATGGCTGCTCAACAAGTAACTGCAAAATTGAAGGCTCAGGGTTACCATCTGGAGATGAAATCATTAGAGGAGCTTTTGAAGACACTGTCCAAGATTGAAGCAAGGCTAATCGGATATGACGAGTTACCACTAGCTCTAGTTTCTTCGAGTGCCTCGATCGATATTGGAAACTTGGAGGATCATCCTAATAATTGCATAGATACAAAGCTTAATTTTGCAAACTTGATTTCGGAGGATCGTCCTAATAACTGCGTAAATACAGAGCTCAATATTGCAAACTTGAGTTTGGAAGATCACCTCAACAGTCCAAATTTGGAGGTCAACATGAAGCTAGAGCCGACATGTATCTCTAGTTTCCGAAAGAAGTCCTCCAGAGCTGGCCCATCTTTATTAAAGAGAAGAGACCACAGTCAAACTATTCAGGAAGAAATCTTCGACGTTGATCTAGATGCGCATGACAAAAGAACAGCGAGATCACAATTAAATGATATATGTGCTGCAAATTGCTGGAGGTTGCCGTTGTATGTGTGTTGTAAGGAGGAAGGGCCAAGCCATTTGAAATTGTTCACTTTCAAGGTGGTGATTGTGATGGAGGAAGCTGAAGATGTGTTATTGGAATGCATTGGTCAGCCTCAAGCAAAGAAGAAAGTAGCAGCAGAGGAAGCTGCACAAGGTGCACTTTGGTTTTTGAAGAAGGAAGGTTACAACGATACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78339.p1 GENE.R_Transcript_78339~~R_Transcript_78339.p1 ORF type:complete len:1655 (+),score=319.56,Ribonuclease_3|PF00636.22|5.4e-24,Ribonuclease_3|PF00636.22|1.1e-23,Ribonucleas_3_3|PF14622.2|2.2e-08,Ribonucleas_3_3|PF14622.2|3.8,Ribonucleas_3_3|PF14622.2|2.4e-16,Dicer_dimer|PF03368.10|3.2e-24,Dicer_dimer|PF03368.10|2.2e+02,Dicer_dimer|PF03368.10|3.1e+03,Helicase_C|PF00271.27|3.1e-17,DEAD|PF00270.25|2.3e-15,ResIII|PF04851.11|5.7e-14,DND1_DSRM|PF14709.2|5.3e+02,DND1_DSRM|PF14709.2|1.3e-12,dsrm|PF00035.21|1.6e+02,dsrm|PF00035.21|0.07,dsrm|PF00035.21|0.0041,SNF2_N|PF00176.19|9.8e-06 R_Transcript_78339:277-5241(+)
MGDDRLAITDIGDSLDQTEMGPTSNASISKQDPRKIARGYQLELSRKALEENMIVVLETGCGKTLIAILLMSYMDHLIKKPQKQLCVFLAPTVLLVHQQAEVIEQFTDFKVGIYYGDAKHLKTHSAWQKEVEQYEVLVMTPQVLLHSLCHCFIRMEAIALLIFDECHYAQVESNHPYAEIMKVFYKTEGAKIPRILGMTASPICGKGASISSLEALLHAKVYTVNNKNELETVVVSPSVEVYHYRSNTGSLSGSHHKCLEKLEEIKRQCISVLCRTADDPSRVRNIKKLLKKLHNNMVFSLTSLGFWGALQAGRILLNGDGCERNELIEAKTNSGDDLIHREYLAQIVSLLESECAGDIVNGITSDLSCTKVLKEPFFSHKVLRLIGILSNFRSRPDMKCIIFVNRIIIARSLSYVLGQIKILSPWKCDFLAGVHSGLKRMSRKTMNIILEEFRSGKLNLLVATKVGEEGLDIQTCCLVIRFDLPETLASFIQSRGRARMPQSEYAFLVDSDSEREMNLMDSFRKDEDHMNMEIRTRKSNEVIANIKEEVYSVGSTGATISTQTSVSLLYHYCSKLPHDEYFNPKPDLFYVDDAEGTICHIILPCNAPIHHIVSSPHSSTEAAKKDACLKACKELHRIGALTEYLLPEQVDMEDESGSELHDSDDSEDEDTPFELQEMLIPAALKEPWSDVDNLVCLNSYFIRFMPKPHDRQYKEFGLFVKAPLPSEAETMEIDLHLAYGRSVLTDLVPSGVAEFNEEEVLLAQNFQEMFLKMILDRTKFMSSHVPLKNCRITESDSPSFYLLLPVTRHEYEKTMSVDWMIIKRCLSSPIFAPPTHAVDCQIPLDEYLHLAEGPTSVNLILNSLVYVAHKNSFFFITKVLPDKNGYSLHNNSTSHVEQLSEKFQLVHPGQPLLQAKQLFCLRNLLHDRKKGKSESNNLEEHFFELPPEVCQLKIIGFSKDIGSSLSLLPSVMHRLENLLVAIELKHMLSKSFSEGSVVSAERVLEAVTTEKCLERFSLERLEVLGDAFLKFAVGRYLFLKHEAFDEGQLTRKRSSVVNNSNLCKLAIKNKLQVYIRDQEFDPSQFFALGHPCPTICTKPEEKSIHSQSEANLRRGADNRQVRCSKNHHWLSKKTIADVVEALLGAYIVDSGFKAAIAFLRWFGIQVEIDVSQVLRAWTASATFKSVADCIDIATIEGYLGHQFAHKGLLLQAFIHPSYNRHRGGCYQRLEFLGDAVLDYLITSYLYSVFPDLKPGQLTDLRSSLVNNTSFARVATSRMLYKFIICENSNLSDAINKYVNFTGKCASERDILEEPPCPKALGDLVESCIGAILLDAGFDLNLVWKVMLTVLDPIMGFSSLQPSPVRELFELCQYHGWDLQFLSLRKNRVFMVEAVVHGKHFHSAASVTNRSKRMARRMAAQQVTAKLKAQGYHLEMKSLEELLKTLSKIEARLIGYDELPLALVSSSASIDIGNLEDHPNNCIDTKLNFANLISEDRPNNCVNTELNIANLSLEDHLNSPNLEVNMKLEPTCISSFRKKSSRAGPSLLKRRDHSQTIQEEIFDVDLDAHDKRTARSQLNDICAANCWRLPLYVCCKEEGPSHLKLFTFKVVIVMEEAEDVLLECIGQPQAKKKVAAEEAAQGALWFLKKEGYNDT*

Click here to download the sequence:
Link to NCBI Protein BLAST