Transcript Information: R_Transcript_78510.p1


Annotated TAIR IDAT3G11130.1
Annotated Gene NameClathrin, heavy chain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3482575-3491667 | Reverse length=1705
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.58433954021
Replicate 26.390178387569
Replicate 39.304972911729
Condition 2: 8 Hour
Replicate 15.9921930367793
Replicate 24.6943963120004
Replicate 311.56742391088
Condition 3: 24 Hour
Replicate 113.375418123967
Replicate 214.630445028035
Replicate 312.507259821084


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78510.p1 GENE.R_Transcript_78510~~R_Transcript_78510.p1 ORF type:3prime_partial len:805 (+),score=165.63,Clathrin|PF00637.16|1.9e+03,Clathrin|PF00637.16|5.6e-22,Clathrin|PF00637.16|7.6e-17,Clathrin_propel|PF01394.16|5.8e-07,Clathrin_propel|PF01394.16|0.02,Clathrin_propel|PF01394.16|2.2e-09,Clathrin_propel|PF01394.16|0.0036,Clathrin_propel|PF01394.16|1.2,Clathrin_propel|PF01394.16|0.24,Clathrin_H_link|PF13838.2|9.4e-31,Clathrin-link|PF09268.6|7.7e+03,Clathrin-link|PF09268.6|2.7e-09,Clathrin-link|PF09268.6|9.3e+02 R_Transcript_78510:387-2798(+)
ATGGCGGCGGCAAATGCGCCGATTGTCATGAAAGAAGCTCTCACGTTGCCTAGCATTGGAATTAATCAACAATTCATCACATTCAACAATGTGACGATGGAATCAGAGAAGTACATATGTGTACGAGAAACGTCGCCGCAGAATAGTGTGGTTATTGTTGATATGAGCATGCCAATGCAGCCGTTGCGAAGGCCTATTACTGCGGATTCAGCTCTTATGAATCCAAATACTCGAATCCTGGCTTTGAAAGCTCAACTTCCTGGTACTACCCAGGATCACTTGCAGATATTCAACATTGAAACGAAAACAAAGGTGAAGTCACACCAGATGTCAGAGCAGGTTGTCTTTTGGAAGTGGATATCTCCGAAAATGCTTGGATTAGTCACACAGACATCAGTTTATCATTGGTCGATTGAAGGCGATTCGCAACCTGTGAAAATATTTGAAAGGACAGCTAATATGGCAAACAATCAAATAATCAACTATAAATGTAACTTAGCTGAAAAGTGGTCGGTCTTGATTGGTATTGCACCTGGCTTACCTGAGAAACCCCAACTCGTTAAAGGAAATATGCAACTCTATTCTGTGGACCAACAGCGTAGTCAAGCTCTTGAGGCTCATGCCGCATGTTTTGCCTCCTTTAAAGTCCAAGGGAATGAGAATCCCTCTACTCTTATTGTGTTTGCTACCAAAACCATGAACGCTGGTCAGGTTGTTTCAAAGTTGCATGTTATTGAACTTGGGGCACAACCAGGAAAGCCAGGTTTCACGAAGAAACAAGCTGATCTATTTTTCCCACCAGATTTTGCTGATGACTTTCCAGTTGGAATGCAGGTGTCTCAAAAGTATGGTTTGATATATGTTATTACCAAGCTTGGACTTCTATTTGTATATGATCTTGAGACTGCCAGTGCTGTATACCGCAATAGAATTAGTCCAGATCCAATATTTTTGACATCAGAAGCTTCATCAGCTGGAGGTTTCTATGCCATTAATAGACGGGGACAGGTTCTACTTGCGACTGTCAATGAAACTACTATTGTGCCTTTTGTCAGTGGCCAGTTGAACAATTTGGAGCTCGCTATTAATCTTGCCAAAAGGGGAAATCTTCCTGGTGCAGATAATTTGGTTGTCCAACGTTTCCAAGAATTGTTTGCACAAACAAAGTATAAGGAAGCTGCTGAGCTTGCTGCTGAATCTCCACAAGGAATTTTGCGCACTCCTGATACAGTAGCCAAATTTCAGAGTGTCCCTGTTCAAGCTGGGCAGACACCGCCTCTTTTGCAGTACTTTGGGACACTTTTAACGAGAGGAAAGCTCAATGCATATGAGTCATTGGAACTATCACGCCTTGTTGTCAATCAGAACAAGAAAAATCTACTGGAGAATTGGCTGGCAGAGGACAAACTGGAGTGCAGTGAGGAACTTGGTGACCTAGTGAAGACTGTGGATAATGACCTCGCCTTAAAGATATATATTAAAGCCAGAGCAACCCCTAAGGTTGTTGCTGCTTTTGCTGAACGCAGGGAGTTTGACAAAATTCTTGTGTACTCAAAGCAGGTTGGTTACACACCAGATTACTTGTTCCTTCTCCAAACTATTCTTCGGACAGATCCTCAGGGAGCTGTTAATTTTTCCCTGATGATGTCCCAAATGGAAGGAGGCTGTCCAATTGATTATAACACAATAACTGATCTCTTTCTTCAGAGGAATTTGATTCGTGAGGCAACAGCATTTCTCTTAGATGTTTTGAAGCCAAATTTGCCTGAACATGGCTATTTGCAAACAAAGGTGTTGGAAGTCAATCTTGTTACCTTTCCCAATGTGGCAGATGCCATTTTAGCAAATGGAATGTTCAGTCACTATGATCGTTCTAGAGTCGCTCAACTTTGTGAGAAAGCTGGTCTTTACATACAAGCTCTTCGGCATTACACTGACTTACCAGATATAAAACGTGTCATTGTGAACACTCATGCAATAGAACCACAGGCTCTTGTTGAGTTCTTTGGTACTCTTTCACGGGAATGGGCATTGGAGTGCATGAAGGATCTTTTGCTTGTTAATCTCAGAGGCAACCTTCAGATAATTGTTCAGACGGCCAAGGAGTACTGTGAGCAGCTGGGTGTTGATGCATGTATTAAACTCTTTGAGCAATTCAAGTCATATGAAGGCTTGTACTTCTTCCTTGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTCAAATACATTGAAGCAGCTGCTAAAACGGGGCAGCTGAAAGAAGTGGAACGAGTGACCCGAGAATCCAATTTCTATGATGCTGAAAAGACAAAACATTTTTTGATGGAAGCCAAGCTTCCTGATGCACGTCCTCTTATCAATGTCTGTGATCGATTTGGTTTTGTTCCAGATCTCACACACTAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78510.p1 GENE.R_Transcript_78510~~R_Transcript_78510.p1 ORF type:3prime_partial len:805 (+),score=165.63,Clathrin|PF00637.16|1.9e+03,Clathrin|PF00637.16|5.6e-22,Clathrin|PF00637.16|7.6e-17,Clathrin_propel|PF01394.16|5.8e-07,Clathrin_propel|PF01394.16|0.02,Clathrin_propel|PF01394.16|2.2e-09,Clathrin_propel|PF01394.16|0.0036,Clathrin_propel|PF01394.16|1.2,Clathrin_propel|PF01394.16|0.24,Clathrin_H_link|PF13838.2|9.4e-31,Clathrin-link|PF09268.6|7.7e+03,Clathrin-link|PF09268.6|2.7e-09,Clathrin-link|PF09268.6|9.3e+02 R_Transcript_78510:387-2798(+)
MAAANAPIVMKEALTLPSIGINQQFITFNNVTMESEKYICVRETSPQNSVVIVDMSMPMQPLRRPITADSALMNPNTRILALKAQLPGTTQDHLQIFNIETKTKVKSHQMSEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSQPVKIFERTANMANNQIINYKCNLAEKWSVLIGIAPGLPEKPQLVKGNMQLYSVDQQRSQALEAHAACFASFKVQGNENPSTLIVFATKTMNAGQVVSKLHVIELGAQPGKPGFTKKQADLFFPPDFADDFPVGMQVSQKYGLIYVITKLGLLFVYDLETASAVYRNRISPDPIFLTSEASSAGGFYAINRRGQVLLATVNETTIVPFVSGQLNNLELAINLAKRGNLPGADNLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILVYSKQVGYTPDYLFLLQTILRTDPQGAVNFSLMMSQMEGGCPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEVNLVTFPNVADAILANGMFSHYDRSRVAQLCEKAGLYIQALRHYTDLPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDAEKTKHFLMEAKLPDARPLINVCDRFGFVPDLTHY

Click here to download the sequence:
Link to NCBI Protein BLAST