Transcript Information: R_Transcript_78527.p1


Annotated TAIR IDAT3G59090.2
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:21839334-21842449 | Forward length=373
E-Value8.4E-123
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.8245398906418
Replicate 27.4944301769222
Replicate 37.3976433030067
Condition 2: 8 Hour
Replicate 15.2023792380833
Replicate 26.7145990797894
Replicate 37.5074650157974
Condition 3: 24 Hour
Replicate 18.9099705104687
Replicate 210.371594832396
Replicate 39.5487436877682


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78527.p1 GENE.R_Transcript_78527~~R_Transcript_78527.p1 ORF type:complete len:353 (+),score=59.04,DUF1084|PF06454.7|1.2e-12,DUF1084|PF06454.7|4.8e-10 R_Transcript_78527:377-1435(+)
ATGTGGGAATTGAGGGGTGGTACTTGCTTCCCTCCTGAGATTATTGCTGTTGATGCTGCCCTTGCCTGTATTGATGCTGCTATTGCTGTTCTTGCTTTCTGGCAGTTAATGAGGATTCACTCAAGAAGTTACCAAGTTGGTTGGACACGCCAAAAGGTCTTTCATTTCATGATTGGGCTCTCTAACTTGGGTTATGTTGGTTATTTCGTATTGACTCTTATTGCCACTTGCAATTCATGGTCATGCTGGTCAAATTCCTGTGGCTTTGTATTCATGGCCTTCCCAAAGATCCTGTTTCTTGCAGCTTTTCTGCTACTTTTGTCATACTGGGCCGATCTCTGCCATCAGGCTGATGATGAAGATGATGAGGGGGAGAGTAGTTCTCGTGAAACTTTATTGGAGAAGTCAAGAAAGCCAGCATCATCAGACATTAGCAGTTATCAGCGATGTCTTCCTGTTCCGTCCTGTCATGTTGGAAGTCGCCAAAGATATGTTATTGTAGTCACTGTGGTAATATTTGTTTTGATGATTGTGTTCGCTGTGCTAATTTGGATTGGTCTGGGGAAGAATCCAATTGATTCATCAACTGTTGCCAGGGTATATGTGGATATTTTTGCAATTGGAATTCTTTTGTTAGGAGGAGCCTTAGCAATTTATGGACTCCTAATATATTTGAAGATGAGCAAAGTCAGGTCTGAGGGAGTAACAGAGATGCAGAAGGTCAAAGGTCTTGCTGTTGTTTCTCTTGCATGTTTCACAACAAGTGCTTTGGTAGCTCTTCTCACAGATATTCCGGTTCTTTATCGTTGGCATCAAGAGCATATAAGTGGTGTCAGTACTATGCTCTTACTGTTCCTATACTATTTTATAGGTTCATCAACACCGTCTGCATTTGTACTGTGGAATATGAGAGAACTACCCCCATCAAGGGCAACAGACAGACATGAAGATTCTAGAATAGTGTTCATAAATGATAGTTCAACAGGGGTATGTGATTCTCAGCGTTGGACAACGGTCACAAGCTTGCAAAATCAGAACTCAAAAGCAAGTCCCATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78527.p1 GENE.R_Transcript_78527~~R_Transcript_78527.p1 ORF type:complete len:353 (+),score=59.04,DUF1084|PF06454.7|1.2e-12,DUF1084|PF06454.7|4.8e-10 R_Transcript_78527:377-1435(+)
MWELRGGTCFPPEIIAVDAALACIDAAIAVLAFWQLMRIHSRSYQVGWTRQKVFHFMIGLSNLGYVGYFVLTLIATCNSWSCWSNSCGFVFMAFPKILFLAAFLLLLSYWADLCHQADDEDDEGESSSRETLLEKSRKPASSDISSYQRCLPVPSCHVGSRQRYVIVVTVVIFVLMIVFAVLIWIGLGKNPIDSSTVARVYVDIFAIGILLLGGALAIYGLLIYLKMSKVRSEGVTEMQKVKGLAVVSLACFTTSALVALLTDIPVLYRWHQEHISGVSTMLLLFLYYFIGSSTPSAFVLWNMRELPPSRATDRHEDSRIVFINDSSTGVCDSQRWTTVTSLQNQNSKASPI*

Click here to download the sequence:
Link to NCBI Protein BLAST