Transcript Information: R_Transcript_78684.p1


Annotated TAIR IDAT4G19440.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10602006-10604483 | Reverse length=825
E-Value3.6E-170
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.500933945927
Replicate 21.2911341398016
Replicate 31.7104591762866
Condition 2: 8 Hour
Replicate 11.5774202894272
Replicate 21.9643527239695
Replicate 33.4283422694435
Condition 3: 24 Hour
Replicate 13.092413272253
Replicate 22.5187557737409
Replicate 32.9162241969365


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78684.p1 GENE.R_Transcript_78684~~R_Transcript_78684.p1 ORF type:complete len:683 (+),score=128.03,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|8.7e-07,PPR_2|PF13041.2|3.4e-14,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|5e-17,PPR_2|PF13041.2|3.4e-13,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.4e-14,PPR_2|PF13041.2|6e-05,PPR_2|PF13041.2|3.5e-18,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|2.6e-07,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|8e-09,PPR_1|PF12854.3|1.2e-10,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|6e-12,PPR_1|PF12854.3|7.5e-05,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|79,PPR_1|PF12854.3|3.5e-06,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|3.6e-07,PPR_1|PF12854.3|2.9e-06,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|5.7e-10,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|0.47,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|1e-06,PPR|PF01535.16|4.7e-08,PPR|PF01535.16|0.22,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|1.7e-09,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.41,PPR|PF01535.16|0.88,PPR|PF01535.16|0.081,PPR|PF01535.16|1.8e-11,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.0002,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|5.1e-07,PPR|PF01535.16|8e-09,PPR|PF01535.16|2.8e-08,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|8.6e+03,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|0.00024,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|7.1e+02,PPR_3|PF13812.2|29,PPR_3|PF13812.2|8.7e-06,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|3.7e-05,PPR_3|PF13812.2|0.0064,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.17,MRP-S27|PF10037.5|2.5e+02,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|29,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|6.9,MRP-S27|PF10037.5|46,MRP-S27|PF10037.5|35,MRP-S27|PF10037.5|0.24,ATP13|PF12921.3|1.5,ATP13|PF12921.3|2.1e+03,ATP13|PF12921.3|2.4e+03,ATP13|PF12921.3|2.6e+02,ATP13|PF12921.3|2.8e+02,ATP13|PF12921.3|54,ATP13|PF12921.3|7.4,TPR_7|PF13176.2|2.1e+02,TPR_7|PF13176.2|4.6e+03,TPR_7|PF13176.2|3.1e+03,TPR_7|PF13176.2|3.4,TPR_7|PF13176.2|4.5e+03,TPR_7|PF13176.2|40,TPR_7|PF13176.2|5.8e+03,TPR_7|PF13176.2|42,TPR_7|PF13176.2|4.1e+03,TPR_7|PF13176.2|2.1e+02,TPR_7|PF13176.2|5.2e+02,TPR_7|PF13176.2|1.3e+04,TPR_10|PF13374.2|37,TPR_10|PF13374.2|1.2e+04,TPR_10|PF13374.2|1.4e+02,TPR_10|PF13374.2|2.5e+02,TPR_10|PF13374.2|1.5e+02,TPR_10|PF13374.2|1.9e+02,TPR_10|PF13374.2|1.3e+03,TPR_10|PF13374.2|1.6e+02,TPR_10|PF13374.2|1.7e+03,AEP1|PF17049.1|8.8,AEP1|PF17049.1|7.5e+02,AEP1|PF17049.1|4.2,AEP1|PF17049.1|6.3e+02,AEP1|PF17049.1|1.1e+03,AEP1|PF17049.1|22,AEP1|PF17049.1|5.9e+02,AEP1|PF17049.1|1.1e+02 R_Transcript_78684:1795-3843(+)
ATGCTGCAACTTATACAATCCTTATTGATGGGTATACCAATGATGTGTGAAGATGTGTATGTGAAGATGTGTGAAAAAGGTAAGGAGGGAGATGTGCATTTGTACACAGCAATGATCAATCTTTTTTGTAGGAAAGAAGATATGAAGAGAGCATGTAGTCTGTTTGATGAAATGGTTGAGAAAGGCCTTTATCCGAGTGCTCACAGTTATGGGGCTTTGGTAAATGGTTTATGCAGAGCTGGGCAGTTGGAGGCTGCTGAGACACTTGTAAATGAGATGCAAAGCAGAGGGCTGAATTTGAATAAGGTGATATTTAATACTTTGATAGATGGTTATTGCAAAAGAGGAATGATCAATGAAGCACTTAGGCTAAAGGATGTCATGGAAAGGAAAGGATTGGTGCCTGATGCATATGCCTACAATATTATTGCAAGTGGGTTTCGTACCTTGAATAAAAACGAGGAAGCCAAGAGGTTCTTGTACATGATGTTAGAGAAGGGATTTTTGTTGAATATTGTGAATTATTGTACTTTGATTGACATATATTGTAAGGAAGGAAACTTTGCTGAAGCAAAGAGGCTTTTCGAGGAGATGGAGAAGAAGGGTGTCGGCCCTAGTGTTGTAGCTTACAATACTTTGATTGATGGGTATTGTAGAGTAGGAAGAGTTGTTGAGGCTTTGAAGATAAAAGATGAGATGTTACGAATGGGAATATCGCCTAATTCATCGTCCTATCATTCGCTTCTACATGGCTTTTGCCAAAGTAATATGGCTGAGAAAGCTTCACTGCTGTTGCAGGATATGCTTTCGAGAGGGTTATCTGTAAATTTAGGTGCATTTAATTCTGTCCTAAATAGCCTTTGTCGGAACAGTAACCTGGACTCTGTGTTATGTGTAGTTCAAGTGATGCTATTTAGAAATTTGAAACCCAATGATGGTGTGCTAACAACGATAATGGTTCGCAGTTGTAAAGAGGGCAAACATTCACTGGCTGTTGAGCTTTGGTTCAGGCTTGTGGAAAAAGGGTTTGCACCAAATGTGGTGACTTCAAATGCTATAATTCACAGACTTTGTGAAGCTGGTATTATGCATGAAGCTGCAAGGATTCTTAAGGCGATGGTGAAAAGGAGATTTAAATTGGATAGGACCACATACAACTCCCTCATCTCAGGTTGTTGTAAAGAAGGTAAATGGGAGGAAGCTTTTGAGTTGAGAAAACAGATGGAAGAGAGTGGGATTCAATCAGACACCACTACCTATAACCTACTTCTGCATGCTCTGTGCAGCATGGGCAAGATAGATGAAGCCATGAATTTTTGGGATGAGTGCAAAAGAAATGGAATGGTTTCAAATGTTTATACATATGCAGTTATGATAGATGGATATGGAAAGGCTGAAAAGATTAATGAGGCAGTAAATCTTTTTAATGACCTGGTCAATTTAAAACTCCAGCTAAACTCTGTCGTTTATAATTCACTTATCTCAGCGTACTGTAGGGTTGGGAATATGGTCCAAGCCATTCACCTTTGCGATGACATGAGGAGCAAGGCCATTAAGCATACACAATATACTTATTCCTGTCTTATAAATGGGCTGGTTAGTATTGGCAACCTCCAGGAGGCTGAGGGACTCATTGAAGAAATGAGAAAGGAAGGTTTAATGCCTGACGTTGTTTGTTATACTGCTTTGATGGGTGGTTACTGCAAACTTGGTCTGATGGAAAAGGCGGAGAGCATCTTGCAGGAGATGTGTTCTAATGGCCTATGTCCAAATAAAATAACCTATACCATCATGATTGGTGGCTATTGTAAAATTGGTAATTCAGAAAAGGCAACTAAGGTTCTGGAAAGAATGTTTGAAGATGGAATTATTCCTGATAATGTCACATACAAGGCCTTGACAAGTGGCTTGTCCAAGGAAGGAAAGTTGGAAGAAGCATTTAAAATGACAGATCGTATGATGCAGCAGGGAATTCCTTTGGATGAAGTTACATGTACAATGTTGATCCATGGGATGCAGCATCCGCTGGCAGTCACAAATCAAGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78684.p1 GENE.R_Transcript_78684~~R_Transcript_78684.p1 ORF type:complete len:683 (+),score=128.03,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|8.7e-07,PPR_2|PF13041.2|3.4e-14,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|5e-17,PPR_2|PF13041.2|3.4e-13,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.4e-14,PPR_2|PF13041.2|6e-05,PPR_2|PF13041.2|3.5e-18,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|2.6e-07,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|8e-09,PPR_1|PF12854.3|1.2e-10,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|6e-12,PPR_1|PF12854.3|7.5e-05,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|79,PPR_1|PF12854.3|3.5e-06,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|3.6e-07,PPR_1|PF12854.3|2.9e-06,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|5.7e-10,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|0.47,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|1e-06,PPR|PF01535.16|4.7e-08,PPR|PF01535.16|0.22,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|1.7e-09,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.41,PPR|PF01535.16|0.88,PPR|PF01535.16|0.081,PPR|PF01535.16|1.8e-11,PPR|PF01535.16|2.1e-06,PPR|PF01535.16|0.0002,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|5.1e-07,PPR|PF01535.16|8e-09,PPR|PF01535.16|2.8e-08,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|8.6e+03,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|0.00024,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|7.1e+02,PPR_3|PF13812.2|29,PPR_3|PF13812.2|8.7e-06,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|3.7e-05,PPR_3|PF13812.2|0.0064,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.17,MRP-S27|PF10037.5|2.5e+02,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|29,MRP-S27|PF10037.5|18,MRP-S27|PF10037.5|6.9,MRP-S27|PF10037.5|46,MRP-S27|PF10037.5|35,MRP-S27|PF10037.5|0.24,ATP13|PF12921.3|1.5,ATP13|PF12921.3|2.1e+03,ATP13|PF12921.3|2.4e+03,ATP13|PF12921.3|2.6e+02,ATP13|PF12921.3|2.8e+02,ATP13|PF12921.3|54,ATP13|PF12921.3|7.4,TPR_7|PF13176.2|2.1e+02,TPR_7|PF13176.2|4.6e+03,TPR_7|PF13176.2|3.1e+03,TPR_7|PF13176.2|3.4,TPR_7|PF13176.2|4.5e+03,TPR_7|PF13176.2|40,TPR_7|PF13176.2|5.8e+03,TPR_7|PF13176.2|42,TPR_7|PF13176.2|4.1e+03,TPR_7|PF13176.2|2.1e+02,TPR_7|PF13176.2|5.2e+02,TPR_7|PF13176.2|1.3e+04,TPR_10|PF13374.2|37,TPR_10|PF13374.2|1.2e+04,TPR_10|PF13374.2|1.4e+02,TPR_10|PF13374.2|2.5e+02,TPR_10|PF13374.2|1.5e+02,TPR_10|PF13374.2|1.9e+02,TPR_10|PF13374.2|1.3e+03,TPR_10|PF13374.2|1.6e+02,TPR_10|PF13374.2|1.7e+03,AEP1|PF17049.1|8.8,AEP1|PF17049.1|7.5e+02,AEP1|PF17049.1|4.2,AEP1|PF17049.1|6.3e+02,AEP1|PF17049.1|1.1e+03,AEP1|PF17049.1|22,AEP1|PF17049.1|5.9e+02,AEP1|PF17049.1|1.1e+02 R_Transcript_78684:1795-3843(+)
MLQLIQSLLMGIPMMCEDVYVKMCEKGKEGDVHLYTAMINLFCRKEDMKRACSLFDEMVEKGLYPSAHSYGALVNGLCRAGQLEAAETLVNEMQSRGLNLNKVIFNTLIDGYCKRGMINEALRLKDVMERKGLVPDAYAYNIIASGFRTLNKNEEAKRFLYMMLEKGFLLNIVNYCTLIDIYCKEGNFAEAKRLFEEMEKKGVGPSVVAYNTLIDGYCRVGRVVEALKIKDEMLRMGISPNSSSYHSLLHGFCQSNMAEKASLLLQDMLSRGLSVNLGAFNSVLNSLCRNSNLDSVLCVVQVMLFRNLKPNDGVLTTIMVRSCKEGKHSLAVELWFRLVEKGFAPNVVTSNAIIHRLCEAGIMHEAARILKAMVKRRFKLDRTTYNSLISGCCKEGKWEEAFELRKQMEESGIQSDTTTYNLLLHALCSMGKIDEAMNFWDECKRNGMVSNVYTYAVMIDGYGKAEKINEAVNLFNDLVNLKLQLNSVVYNSLISAYCRVGNMVQAIHLCDDMRSKAIKHTQYTYSCLINGLVSIGNLQEAEGLIEEMRKEGLMPDVVCYTALMGGYCKLGLMEKAESILQEMCSNGLCPNKITYTIMIGGYCKIGNSEKATKVLERMFEDGIIPDNVTYKALTSGLSKEGKLEEAFKMTDRMMQQGIPLDEVTCTMLIHGMQHPLAVTNQE*

Click here to download the sequence:
Link to NCBI Protein BLAST