Transcript Information: R_Transcript_78805.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value3.7E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2008526943894
Replicate 20.69066777685191
Replicate 30.45210666308196
Condition 2: 8 Hour
Replicate 10.48327365027458
Replicate 21.0297774532125
Replicate 31.0747664183124
Condition 3: 24 Hour
Replicate 10.60415282178169
Replicate 22.0314054241321
Replicate 31.0079864000545


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78805.p1 GENE.R_Transcript_78805~~R_Transcript_78805.p1 ORF type:internal len:152 (+),score=33.32,Plant_NMP1|PF06694.7|1.4e-53 R_Transcript_78805:1-453(+)
GGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATATATCCCTTGCCAGATATTGTTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAAGTTTGTTGCTCTAATCTTAAGATTATTGTTCACTGCAGCTTGCTTCGCGTATATGCTGTGTTGTTCTTTCGCCTTTTCTTCCTTTTGAACTTCATCCCTAGCTTTGATCTTTTTGGTTTCAGCATCCTTACAATCCGGATGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78805.p1 GENE.R_Transcript_78805~~R_Transcript_78805.p1 ORF type:internal len:152 (+),score=33.32,Plant_NMP1|PF06694.7|1.4e-53 R_Transcript_78805:1-453(+)
GRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIVDLESKLSELSKKLLTLQQNVDDLASKVCCSNLKIIVHCSLLRVYAVLFFRLFFLLNFIPSFDLFGFSILTIRMK

Click here to download the sequence:
Link to NCBI Protein BLAST