Transcript Information: R_Transcript_78807.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value4.8E-193
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.525283503131
Replicate 214.970171898025
Replicate 312.526040800313
Condition 2: 8 Hour
Replicate 110.800411728996
Replicate 210.268441208037
Replicate 312.28386942286
Condition 3: 24 Hour
Replicate 113.594351107644
Replicate 212.393589588059
Replicate 313.092947214519


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78807.p1 GENE.R_Transcript_78807~~R_Transcript_78807.p1 ORF type:complete len:331 (+),score=81.87,Plant_NMP1|PF06694.7|8.2e-187 R_Transcript_78807:499-1491(+)
ATGGCGGCGAAGCAAATGGAGGAGATACAAAAGAAGTTGACGACTTTGAATTATCCGAGAGCAAATGCACCTGCTCAGTCTTTGCTCTTTGCTGGCATGGAACGTTACGCCCTTCTTGAATGGCTCTTCTTCAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTGGCAGAAATTGCAAAGTTTCTGGGTATCACAACGACAGTGGATACAGAGATCATTCAAGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATATATCCCTTGCCAGATATTGTTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGTTTCTGGGGAATTTGAGGAATCTTCGTGATTCACATGCTGCAGTTGCAGCTGGGTCATCCGAGACAGTAGGAGGTGAGCCTTCTTCTGTGATGAGAATAATGTCCGAATGTGAATCAGCTCTTACATTGTTAAATCGGGATCTTGGTATCCTTTCGACTTCGATTGCTCGTGAACGGGGTGAGCTGACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78807.p1 GENE.R_Transcript_78807~~R_Transcript_78807.p1 ORF type:complete len:331 (+),score=81.87,Plant_NMP1|PF06694.7|8.2e-187 R_Transcript_78807:499-1491(+)
MAAKQMEEIQKKLTTLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKPPFSQQNLQGDGVDRDEESSRIPYLAEIAKFLGITTTVDTEIIQGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIVDLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAAGSSETVGGEPSSVMRIMSECESALTLLNRDLGILSTSIARERGELTS*

Click here to download the sequence:
Link to NCBI Protein BLAST