Transcript Information: R_Transcript_78810.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value2.1E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.622967950673
Replicate 20
Replicate 31.4072398523234
Condition 2: 8 Hour
Replicate 10
Replicate 20.30526801148376
Replicate 30.80536156336188
Condition 3: 24 Hour
Replicate 10
Replicate 21.3549305803085
Replicate 31.1952330204449


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78810.p1 GENE.R_Transcript_78810~~R_Transcript_78810.p1 ORF type:complete len:293 (+),score=68.77,Plant_NMP1|PF06694.7|1.9e-158 R_Transcript_78810:499-1377(+)
ATGGCGGCGAAGCAAATGGAGGAGATACAAAAGAAGTTGACGACTTTGAATTATCCGAGAGCAAATGCACCTGCTCAGTCTTTGCTCTTTGCTGGCATGGAACGTTACGCCCTTCTTGAATGGCTCTTCTTCAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTGGCAGAAATTGCAAAGTTTCTGGGTATCACAACGACAGTGGATACAGAGATCATTCAAGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATATATCCCTTGCCAGATATTGTTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGGTATTGCATTGCATGTTTTTTTGGTTTAGTAATTCTGCACTTTCTCACACACTGCATCATCTCTACCTCACAAATGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78810.p1 GENE.R_Transcript_78810~~R_Transcript_78810.p1 ORF type:complete len:293 (+),score=68.77,Plant_NMP1|PF06694.7|1.9e-158 R_Transcript_78810:499-1377(+)
MAAKQMEEIQKKLTTLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKPPFSQQNLQGDGVDRDEESSRIPYLAEIAKFLGITTTVDTEIIQGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIVDLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKVLHCMFFWFSNSALSHTLHHLYLTNE*

Click here to download the sequence:
Link to NCBI Protein BLAST