Transcript Information: R_Transcript_78812.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value8.3E-128
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5987994996834
Replicate 21.3793190054502
Replicate 32.8424418914934
Condition 2: 8 Hour
Replicate 11.6085604709869
Replicate 21.79539927192
Replicate 31.5236753440471
Condition 3: 24 Hour
Replicate 11.0054514114323
Replicate 21.4488856205489
Replicate 32.1568176151322


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78812.p1 GENE.R_Transcript_78812~~R_Transcript_78812.p1 ORF type:3prime_partial len:274 (+),score=58.26,Plant_NMP1|PF06694.7|3.1e-125 R_Transcript_78812:563-1381(+)
ATGCACCTGCTCAGTCTTTGCTCTTTGCTGGCATGGAACGTTACGCCCTTCTTGAATGGCTCTTCTTCAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATATATCCCTTGCCAGATATTGTTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGTTGAAGTTTCTGGGTAATTTGAGGAACCTTCGTGATTCACATGCTGCAGTTGCAGCTGGGTCATCCGAGACAGTAGGAGGTGAGCCTTCTTCTGTGATGAGAATAATGTCCGAATGTGAATCAGCTCTTACATTGTTAAATCGGGATCTTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78812.p1 GENE.R_Transcript_78812~~R_Transcript_78812.p1 ORF type:3prime_partial len:274 (+),score=58.26,Plant_NMP1|PF06694.7|3.1e-125 R_Transcript_78812:563-1381(+)
MHLLSLCSLLAWNVTPFLNGSSSGCWATSRLSLNKICKEMVLIVMKSLLGFRGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIVDLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAAGSSETVGGEPSSVMRIMSECESALTLLNRDLG

Click here to download the sequence:
Link to NCBI Protein BLAST