Transcript Information: R_Transcript_78843.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value1E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9306016394414
Replicate 20.6056625120086
Replicate 31.3215425536242
Condition 2: 8 Hour
Replicate 11.1772050455406
Replicate 20.64502543772651
Replicate 30.8726735875186
Condition 3: 24 Hour
Replicate 12.4282296106225
Replicate 21.4844885791735
Replicate 32.9464217847746


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78843.p1 GENE.R_Transcript_78843~~R_Transcript_78843.p1 ORF type:internal len:104 (+),score=13.55 R_Transcript_78843:1-309(+)
CTCAACTTGAACCAACACTTCAGCTCATTCACTTTACCTCTTGTTCTAGGGTTTTCACTTCCAAAACATTTCCTCTACTTTCAGACTCCATTCACTCTCATCTCACAACCCCTTCTTCCTCCACCACCAAAAACCCTTCAATGGAAACAACAACCACAACAGAAGACCCAACACCCACAACAGGCTCCCAATAAACTCATCAAGGGTTTAGCCTCATGCAATTCCACCCTCAGATCTAAATCCCTAAAAGCCCTTCTCACTTGGCTCCCTTCCCAAACCCTAATTCCTGATGACGACCTCAAAAAGCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78843.p1 GENE.R_Transcript_78843~~R_Transcript_78843.p1 ORF type:internal len:104 (+),score=13.55 R_Transcript_78843:1-309(+)
LNLNQHFSSFTLPLVLGFSLPKHFLYFQTPFTLISQPLLPPPPKTLQWKQQPQQKTQHPQQAPNKLIKGLASCNSTLRSKSLKALLTWLPSQTLIPDDDLKKL

Click here to download the sequence:
Link to NCBI Protein BLAST