Transcript Information: R_Transcript_78863.p1


Annotated TAIR IDAT4G01020.1
Annotated Gene Namehelicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:439086-445043 | Forward length=1787
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.9859521871263
Replicate 23.9536209140439
Replicate 35.5001693058171
Condition 2: 8 Hour
Replicate 14.1605508684734
Replicate 24.497090999815
Replicate 35.2988545766478
Condition 3: 24 Hour
Replicate 15.857758055871
Replicate 24.1038754704473
Replicate 36.1822096246557


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78863.p1 GENE.R_Transcript_78863~~R_Transcript_78863.p1 ORF type:5prime_partial len:1795 (+),score=305.86,Helicase_C|PF00271.27|3e-13,Helicase_C|PF00271.27|1.6e+04,OB_NTP_bind|PF07717.12|5.2e-11,HA2|PF04408.19|9.8e-10,IBR|PF01485.17|7.2e+03,IBR|PF01485.17|1.6e+04,IBR|PF01485.17|1.9e-06,IBR|PF01485.17|0.00027,DEAD|PF00270.25|6.2e-06 R_Transcript_78863:2-5386(+)
CCCTACCATTCAATCTTCTTCTCTCACAGTACAAACGTCTGGATTCTTCCCCTTCCTATTTCTCCTCTTTTCTTTTTCAGTCCACTAATTCTACCTTCTCTCTTCTCCAAAAAAACCTCACTCTGTCACTCCCCCACCAAACACACACGCTCACACCTGCCAACCACTCACTCTATTTCTCTTTTTTCCCCGATGAGGCGAACAGACTACTCAACGACGACGTCGAATTTCCGATCCCCAAGGCCGGCGTACAACAACCGGAAACCTACTTTCCCGGCGGATTTCCGGCAACACAGGCCACCAGACCCTCCTCGTCGGCCGAATTTCGTCGTCGAGCTCCATTCCCGTCCCTCCACCCACCATAGAACCTCCGTCGAGGGTTTAATCAAACAATGCGACTCTTCACCGGAAAATTACGTCATCTTCCACTCCGGCGCCGTCGCTGGACGCCTTTTCTTCTCTCAGTGGACTTCCGCCCTTGAATCCGTCGTCGGATTATGGACCTCCTGCCTCTCCGGTTTCCACAACCTCACCCCCTGCCTAATTGCCAACGTGAAGGTCCCATCCGACGAGGATGAGCTCAACGACCGTCTTAAACCCCTCTTCTCCAACAAACTCCGGAGTCTTCTCTCCGGTGAATCCGTCAACAAGTGGCAGAACAAGCTCCTCCAACTCGACGGCGAAATCGGTGCCGTTACTTCTGCCTTGAGGAAAAGAAACTCATTGCGGTTCTTGGAGGAGCTTATCAACAAGAAGAAAGTCCTTATAAGCGAGAAAGATTTGGTCCTTAAAAGGATTGACGAGTTTAGGTCGGCTTTGTATTGTATACTTGACCACGTTGAGGGCTGTGGTTCTATGTTTCTTGAACATGACAGGGTCCCACCTTTCCGGTTTGGTAGCGGGTTTGACTGGCAAAGGATTTATCATCTCATGATGAGGGAGTGTCGGAGACTTGAGGATAGCTTGCCTATTTATGCCTTTCGACAAGATATTCTTCAGCATATCACTTCGCAGCAGATTATGGTATTGATTGGGGAGACTGGATCAGGAAAAAGTACCCAGTTGGTGCAGTTTCTCACTGATTCAGGGGTGGTCACTGATGGATCTCTTGTATGCACTGAGCCAAGGAAGATTGCCGCTATTTCGCTAGCAGAGAGAGTTCAAGAAGAAAGTTATGGTTGCTATGAGAAAAATGCAATTCACTGTGAGCTATCATATTCATCTGCTCAGCAGCTTAAGGGCAAGTTAATATACATGACAGACCACTGTTTATTGCAGCACTGCATGAATGACAGAAACTTGCATGGTGTTTCCTGCATACTTGTAGATGAAGCTCATGAAAGAAGCCTAAATACTGATCTGCTTTTGGCCCTGCTTAAGAATTTACTTCCTCCGAGGCCTGACCTGAGGCTTATCATCATGTCTGCCACAGCTGATGCTAAGCAACTTTCAGAATACTTCTTTGGGTGCGGAATGTTTACGGTAGTTGGCAGAAACTTTCCTGTTGATATAAAATATGTACCTGGCTTGTCTGAAGGAACCTCTTTCTCTGCAATGGTGTCTACCAGTAATGTAGCCCCCTATGTATCAGATACTGTTAGGCTGGTAACTGATATTCATAGAACTGAGCGAGAAGGAACTATTCTTGCGTTTTTGACATCTCCACTGGAAGTTGAATGGGCTTGTGAAAAGTTTGTAGCACCCAATGCTGAACCTTTACCTTTGCATGGCAAGCTTTCATATGAAGAGCAATTGCGTGTGTTCCAGGACTACCCAGGAAAAAGAAAAGTTATATTTGCTACAAATGTCGCTGAAACATCATTGACAATCCCAGGGGTCAAGTATGTCGTTGATTCCGGCATGGCTAAAGAGAGCAGGTTCGAACCTGGTTCTGGCATGAACGTCCTGAGGGTCTGCTGGATCAGCAAGAGTTCTGCCGCTCAACGAGCTGGCCGCGCTGGGAGGACTGGACCGGGACGGTGTTACCGACTCTACTCACAAGATGACTTTCATTTGATGGCTGCTCAGCAGGAACCTGAGATTCGTAGAGTTAATTTGGGTCTTGCTGTCTTGAAGATTGCTGCCCTGGGTGTTAGGAACATACTGGAGTTTGACTTTGTTGATGCTCCCAACCCGGAAGCCATCGATATGGCAATCCGGAATCTCACACAGTTGGGAGCTGTCACTTTGAAAAACGGTGACATCGAGTTGACTGACCAAGGTCGCCATCTGGTTAAACTGGGCATCGAGCCACGATTGGGGAAATTGATGCTTGGCTGCTGCAGTCAGCATCTGAGAAGAGAAGGTCTTGTACTTGCTGCTGTTATGGCAAATTCTAGCAGTATCTTTTGCCGAGTTGGTAATCATGCAGAGAAGCTAAAGTCTGACTGCCTCAAGGTGCCATTCTGTCACCGTGATGGGGATCTCTTTACTCTGCTCTCTGTTTACAAAGCATGGCAGGATGTACCACGGGATAAGAGGAATAAGTGGTGTTGGGAGAACAGCATCAACGCCAAATCTATGCGAAGATGCCAAGACACCGTATTGGAATTGGAGAATTGTCTAAAAAATGAACTCCGCATCATTGTTCCAAGTTACTGGTATTGGAAGCCCGAGGAAACCACACAGTATGACAAAAATCTGAAGAAGGCCATACTGGCTTCACTTGCTGAAAATGTAGCAATGTACTCTGGCTGTGATAAACTTGGCTATAAAGTGGCATTGACTGGTCAGCATGTTCAGCTGCATCCTGCCTGTTCTTTGCTCATGTTCAATAATAAGCCTGATTGGGTTGTCTTTGGTGACATATTGTCTGCATCTGATCAATATTTGGTATGCGTGACTGCATTTGACCAGGAGTTCTTATCGTCTCTTAGCCCTCCTCCTCTCTTTGATGCCTCTGAAGTGGAGAGCCAGAAACTAGAAATGACAACGTTATCTGGTTTTGGCAAGACTCTTCTTAAGAAGTTCTGTGGGAGATCTAACAATGGTTTGCTTTGTCTTGTGTCAAGAATCAGGAAAAACTGCGGTGATGATAGAATACGCATTGAAGTTGACGTTGACAATAATCAGGTTCGGTTATTTTCTCCATCACAAGATACAGACAACATCTTGAATCATGTGAGGAATGCCTTGGACAGTGAAAGAAGATGGTTGCAGAGCGAATGCATGGAGATGTGCCTATATCACGGTGGTCCTGGTCTATTCCCTCCGGTTGCATTGTTTGGCTCTGGAGCTGAAATCAAACATCTAGAGATCAATAAGAGATGCTTGACTGTTGATGTATTTTACCCTAATGTCACTGTTGTGGATGATAAGGAGCTTATGATGTTTGTTGAAAAATATGCCCCAGGAATATGTGCTGTCCACAAGTCTACAGCTCAAACTCAAGAGATGGGAGAGAGAGACAAGTGGGGCAGTATTACATTTCTGACCCCTGATGCTGCTGAAAGGGCGGCTGAGTTGAACAAGGTCGAGTTTAATGGTTCACTGATGGATGTGAATCTTTCAGGGGCTACATTTGGAGCAGATCGGGCCTTTTCATATCCTGCTGTCAAAGCAAAAGTGTCCTGGCCACGTAGGTTCAGTAAAGGCTTTGCATTTGTTAGATGTGAAGCTCATGATGTTGACATAATGATTTCACATTTCTCTGATCTGCGGATCGGAGAAAGATATGTCAGGTGTAAACCTAGTCATAAGGATCCGGATTCTATTGTACTAACTGGAATTGACAAGCAAGCTTCTGAACCAGAGATCTTGTATGCATTGAGGAATGCTACAGACAGGAAAATCCTGAACTTCAATTTGATGAGGGAAGATGCTGTAGACAGTCTGCCTCTTCATGCCTGTGAAGAGATTCTGTTCAGAGAAATTTCTGTTTTCATGCCCAGAGGAAGCCCTCAGATTAATCATTGTAGAGTCCAGGTCTTTCCGCCAGAACCAAAGGATCACTGTATGAAAGCTTTGATTACATTTGATGGAAGGCTAAATTTGGAAGCGGCAAAAGCATTGGAGCAGATTGAAGGCAAGGCTTTACCTGGTTTCCAGCCATGGCAGAAAATACAGTGCCAGCAATTATTTCATTCTTCAGTGTCGTGTCCTTCCTCGGTATACTTCGTTATCAAGAAAGAGCTTGATTCATTGGTTGCCAGCTTCAAAAGTAAAAGTGGGGCAGATTGCATCTTCATCAATGCAAATGGTTCTTGTCGAGTGAGGATATCAGCCACAGCAACAAAAACGGTGGCGGAATTGAGGAAGCCTCTAGAAGAGCTGATGAAAGGGAGGACCATTACTCATGCTGGCCTCACTCCATCTGTTCTACAGCTTCTATTTTCTAGAGATGGCATTGCATTGATGAAGTCCCTTCAGCAAGAGATGGGAATCTATATGATATTTGAAAGACATAGCCTCAGTGTTAGGATTTTTGGGCCTTCTGATAGGATTGTTGCGTCAGAGGAGAGATTTATTCAGCGTCTTCTGAACCTCCATGAAAATAAGCAACTGGAGATCCATCTACGTGGAGTTAATCTGCCTTATGACTTGATGAAGGAAGTTGTGAAGAGGTTGGGTCCTAACCTAGATGGGCTAAAAGCAAAGGTACCTGAAGCTGAGTTCACTCTTGACACACGTCGTCACGTGATTTCCATTTCTGGTACTAAAGAAGCAAAGCAGAAGGTGGAACAGATTGTCAGTGAGATTGCACAAGCAAGTGGTCATTTGAGTAACAGTGAGATACTCAGTGAAAAGGCCTGCCCAATTTGCTTGTGTGATGTGGAGGATGAGTATCAGCTTGAAAACTGCTTGCATGTCTTCTGCAGGTCATGCTTGGTGGAGCAATGTGAGTCTGCTATCAAAAACTATGATAGCTTCCCAATTTGTTGTGCGCATGGGGGCTGTGGGCTTCCATTTTTGCTTGTAGATTTGAAAGCCTTGTTGTCTGGTAAGAAGTTAGAGGAGCTTTTTATGGCTTCTTTGGGGGCGTTTGTGGCATCAAGTTGTGGCAAGTACAGATTCTGCCCTTCCCCTGATTGTCGTTCTGTTTATCAGGTAGCGGGACCTGATAAATCAGAGGAGGCTTTTGTCTGTGGAGCTTGCTATGCCGAGACTTGTACTAAGTGTCATTTAGAGTATCACCCATACTTATCTTGTGAACGGTACAAGGAGTACAAGGAGGATCCAGATGCTTCCTTGAAAGAGTGGTGCAGAGGGAAGGAAGAATATGTTAAGAGGTGCCCAGTGTGTGGCTATAACATTGAGAAGGCTGAAGGGTGCAACCATGTTGAATGTCGGTGCGGGAAACATCTATGTTGGGTCTGTTTGGAGCACTTCCCCAGTAGTGACGATTGCTATGGCCATTTAAGGGCCATTCACAAAGGTATCACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78863.p1 GENE.R_Transcript_78863~~R_Transcript_78863.p1 ORF type:5prime_partial len:1795 (+),score=305.86,Helicase_C|PF00271.27|3e-13,Helicase_C|PF00271.27|1.6e+04,OB_NTP_bind|PF07717.12|5.2e-11,HA2|PF04408.19|9.8e-10,IBR|PF01485.17|7.2e+03,IBR|PF01485.17|1.6e+04,IBR|PF01485.17|1.9e-06,IBR|PF01485.17|0.00027,DEAD|PF00270.25|6.2e-06 R_Transcript_78863:2-5386(+)
PYHSIFFSHSTNVWILPLPISPLFFFSPLILPSLFSKKTSLCHSPTKHTRSHLPTTHSISLFSPMRRTDYSTTTSNFRSPRPAYNNRKPTFPADFRQHRPPDPPRRPNFVVELHSRPSTHHRTSVEGLIKQCDSSPENYVIFHSGAVAGRLFFSQWTSALESVVGLWTSCLSGFHNLTPCLIANVKVPSDEDELNDRLKPLFSNKLRSLLSGESVNKWQNKLLQLDGEIGAVTSALRKRNSLRFLEELINKKKVLISEKDLVLKRIDEFRSALYCILDHVEGCGSMFLEHDRVPPFRFGSGFDWQRIYHLMMRECRRLEDSLPIYAFRQDILQHITSQQIMVLIGETGSGKSTQLVQFLTDSGVVTDGSLVCTEPRKIAAISLAERVQEESYGCYEKNAIHCELSYSSAQQLKGKLIYMTDHCLLQHCMNDRNLHGVSCILVDEAHERSLNTDLLLALLKNLLPPRPDLRLIIMSATADAKQLSEYFFGCGMFTVVGRNFPVDIKYVPGLSEGTSFSAMVSTSNVAPYVSDTVRLVTDIHRTEREGTILAFLTSPLEVEWACEKFVAPNAEPLPLHGKLSYEEQLRVFQDYPGKRKVIFATNVAETSLTIPGVKYVVDSGMAKESRFEPGSGMNVLRVCWISKSSAAQRAGRAGRTGPGRCYRLYSQDDFHLMAAQQEPEIRRVNLGLAVLKIAALGVRNILEFDFVDAPNPEAIDMAIRNLTQLGAVTLKNGDIELTDQGRHLVKLGIEPRLGKLMLGCCSQHLRREGLVLAAVMANSSSIFCRVGNHAEKLKSDCLKVPFCHRDGDLFTLLSVYKAWQDVPRDKRNKWCWENSINAKSMRRCQDTVLELENCLKNELRIIVPSYWYWKPEETTQYDKNLKKAILASLAENVAMYSGCDKLGYKVALTGQHVQLHPACSLLMFNNKPDWVVFGDILSASDQYLVCVTAFDQEFLSSLSPPPLFDASEVESQKLEMTTLSGFGKTLLKKFCGRSNNGLLCLVSRIRKNCGDDRIRIEVDVDNNQVRLFSPSQDTDNILNHVRNALDSERRWLQSECMEMCLYHGGPGLFPPVALFGSGAEIKHLEINKRCLTVDVFYPNVTVVDDKELMMFVEKYAPGICAVHKSTAQTQEMGERDKWGSITFLTPDAAERAAELNKVEFNGSLMDVNLSGATFGADRAFSYPAVKAKVSWPRRFSKGFAFVRCEAHDVDIMISHFSDLRIGERYVRCKPSHKDPDSIVLTGIDKQASEPEILYALRNATDRKILNFNLMREDAVDSLPLHACEEILFREISVFMPRGSPQINHCRVQVFPPEPKDHCMKALITFDGRLNLEAAKALEQIEGKALPGFQPWQKIQCQQLFHSSVSCPSSVYFVIKKELDSLVASFKSKSGADCIFINANGSCRVRISATATKTVAELRKPLEELMKGRTITHAGLTPSVLQLLFSRDGIALMKSLQQEMGIYMIFERHSLSVRIFGPSDRIVASEERFIQRLLNLHENKQLEIHLRGVNLPYDLMKEVVKRLGPNLDGLKAKVPEAEFTLDTRRHVISISGTKEAKQKVEQIVSEIAQASGHLSNSEILSEKACPICLCDVEDEYQLENCLHVFCRSCLVEQCESAIKNYDSFPICCAHGGCGLPFLLVDLKALLSGKKLEELFMASLGAFVASSCGKYRFCPSPDCRSVYQVAGPDKSEEAFVCGACYAETCTKCHLEYHPYLSCERYKEYKEDPDASLKEWCRGKEEYVKRCPVCGYNIEKAEGCNHVECRCGKHLCWVCLEHFPSSDDCYGHLRAIHKGIT*

Click here to download the sequence:
Link to NCBI Protein BLAST