Transcript Information: R_Transcript_79084.p1


Annotated TAIR IDAT5G19730.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6670562-6673202 | Forward length=383
E-Value3E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3184041563731
Replicate 25.8433100215169
Replicate 36.3749882932688
Condition 2: 8 Hour
Replicate 17.5074585923157
Replicate 27.172358326418
Replicate 35.5653523128545
Condition 3: 24 Hour
Replicate 110.720862809164
Replicate 25.4097804825944
Replicate 310.221145113221


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_79084.p1 GENE.R_Transcript_79084~~R_Transcript_79084.p1 ORF type:complete len:212 (+),score=20.86,Pectinesterase|PF01095.15|5.7e-51 R_Transcript_79084:1076-1711(+)
ATGTATAAAATGTATCCCACATATGACCTTGTTGTGTGTCAGAATGTGGCACCACCGCCGCCATCAGGAGCATTAGGGAAGCAAGCAGTAGCACTGAGAATTACAGCAGATAGAGCAGCATTTGTAGGCTGCAAATTCATTGGGGCACAGGATACCCTATACGATCACACCGGGAGACATTACTTTAAGGACTGTTACATCCAGGGCTCAGTCGATTTCATATTTGGTAATGGTCTATCTCTCTATGACGGCTGCCATTTGCATGCTGTGACCAACACCTATGGTGCTTTAACAGCCCAAAAGAGGGAGAGCTTACTGGAGGAAACAGGGTTTTCATTTGTGAATTGCAAGATTACAGGGCAAGGTGTTCTCTACCTTGGGCGAGCTTGGGGAACCTTCTCTAGGGTCATCTTCGCTTACACTTACATGGACAAGATCATCATGCCTAGCGGCTGGTATGACTGGGGTGACAAGAGCAGGGATATGACCGTATTTTTTGGGCAATACAAGTGCTCAGGGCCGGGTGCTGATTATGGAAACAGGGTATCTTGGTCGAGGGAGCTGACTACAGAAGAAGCTAAACCATTCATTTCCCTTGACTTCATTGACGGCCATAATTGGCTCAAAAACTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_79084.p1 GENE.R_Transcript_79084~~R_Transcript_79084.p1 ORF type:complete len:212 (+),score=20.86,Pectinesterase|PF01095.15|5.7e-51 R_Transcript_79084:1076-1711(+)
MYKMYPTYDLVVCQNVAPPPPSGALGKQAVALRITADRAAFVGCKFIGAQDTLYDHTGRHYFKDCYIQGSVDFIFGNGLSLYDGCHLHAVTNTYGALTAQKRESLLEETGFSFVNCKITGQGVLYLGRAWGTFSRVIFAYTYMDKIIMPSGWYDWGDKSRDMTVFFGQYKCSGPGADYGNRVSWSRELTTEEAKPFISLDFIDGHNWLKNL*

Click here to download the sequence:
Link to NCBI Protein BLAST