Transcript Information: R_Transcript_79531.p1


Annotated TAIR IDAT5G49665.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20167119-20169420 | Reverse length=740
E-Value7.3E-236
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.894761675514
Replicate 215.608360891481
Replicate 318.422349812779
Condition 2: 8 Hour
Replicate 117.425126113251
Replicate 216.652349836756
Replicate 322.233322003278
Condition 3: 24 Hour
Replicate 124.931692769769
Replicate 220.859140352861
Replicate 320.671721093181


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_79531.p1 GENE.R_Transcript_79531~~R_Transcript_79531.p1 ORF type:complete len:756 (+),score=65.40,VWA|PF00092.24|4.9e-14,VWA_2|PF13519.2|3.5e-13,VWA_3|PF13768.2|7.1e+03,VWA_3|PF13768.2|3.3e-11,zf-RING_11|PF17123.1|1.1e-09,zf-RING_2|PF13639.2|1e-06,zf-C3HC4|PF00097.21|1.2e-05 R_Transcript_79531:591-2858(+)
ATGGGAACTGGTTGGAGAAGAGCATTTTGCACAACAATCCCAAAAGAAAGAGAAACAGATAAAAATCGCCGTCACCACCAACACCAAGAAGCAGTAGAACAACAACAGCCGAGTCCCAGCCCAAGAAGCTGTGCCAAATTGAGCTTCTTTTCAAGTGCTAGCAATCCAACCACTCCAAGAGTACAACAAACTAGTGCTAGTCAGCCTTCAACCCCCACCTTAAGATGCCGGACTTTTCCAGACCGCCATTCGGGTTTGAACCCGGGCCCCAAGCTCCATTGCAACACCAAAAGTCCCAAGACCAAGCTAAGTTCCAACCCTTCCTCGCCTCGCTCCCCCTTCTCCATCCTTAAGAACACCCTCCGCCTTTCTAGGAATGGGTGCGGAGTGTGTATGCAGAGCGTGAAGACAGGGCAGGGGATGGCCATATACACAGCAGAGTGTTCACATGCCTTCCATTTCCCCTGCATAGCATCCCATGTGAGGAAACAGGGCAACCTGATCTGCCCTGTTTGCAATGTCACTTGGAAGGACGTTCCTCTCCTTTCATTCCACAAGAACAACCCTTCCGAATCTGAGCAGATCATCGAGAAAAGACCCATCTCCACCGCCATCGCCGCCAGTGCTCCGGCCACTCCTACGGGTTTAAACCGGATCCACTTCGAGGACAAGCGGATCCAGTCCTCGATCTCCTCCGTCAAAATAACAAAAAAGTCTTCATCGTCAGAAAGATCCTACAACGACGACGAGCCACTGCTTTCACCAACCTCGGCCTCGAGGTTCAACCCGATACCTGAGGCCGAGGAAGAAACAGAGGACAATGAGGAGTTTCAAGGGTTCTGTGTAACTCCAAACCCTCCAACGACACCTAAGAAAATGAGCGTAGATCCTTACGCTACAAATGACAAGAAGGCACACCGTAATGTGGAGGTGAAGCTTCTACCTGAAGCTGCTGTTGTTTCGGCTAGCCGCTCTTATGAGACTTACGCGGTGGCGCTGAGGGTGAAAGCGCCATCGGCTACGGCGGAGATACTTTCACCAACCCGCCGTGCTCCGGTTGATCTCGTGACGGTTCTTGACGTCAGTGGGAGTATGACTGGAGCTAAGCTACAGATGCTAAAAAGAGCTATGAGGTTGGTTATTTCTTCGCTCGGCTCGGCTGATCGGCTTAGTATTGTAGCTTTCTCGGCTTCTCCTCAGAGATTGTTGCCTTTGAAGAGAATGACGGCTCACGGCCAGAAAACGGCTCGGAAAATCGTTGACCAGCTTGGGTGTGGTCAAGGGACTTGTGTTTGTGAAGCCTTGAGGAAAGCCGCCAAGGTGTTGGAAGACCGCAGGGAAAAAAACCCGGTTGCTAGTATTATGCTTTTATCTGACGGTCAAGATGACCGGGTTGGTGGTGGTAATAATAAGTCGAGTCAAAGGCAGTCCGGTTCAAAGGCACAGACCCGGTTCACTCATATTGAGATCCCGGTTCATTCATCGGGGTACGGGTTCCCAACTCAATTGCCGGCTGAGGATGCTTTCGCGAAGTGTGTTGGCGGTTTGCTTAGTGTGGTTGTTCAGGATTTGAGGGTTCAGCTCGGGTTCGCTTCCGGTTCAGCTCCGGCTGAGATCATGGCGGTTTATAGTTGTAACTCCCGGCCTACTTTAATGAGCTGCGACTCGGTCCGGCTTGGGGACTTGTACGCTGAAGAAGAGAGGGAGTTGTTGATTGAGCTGAAGGTGCCCACGTCAGCAATGGGGTCCCACCACGTGATATCTGTTCGTTGTAGTTACAAGGACCCAGTAAGCCAAGAGTTGATGATTGGGCGTGAGCGGGCCCTACTGGTCCCTCGGCCCCACGCCGTTCGATCATCTGACCCCAGGATCGAACGCCTCAGGAACCTCTTCATTCACACCCGAGCCGTAGCCGAGTCGCGCCGGCTTGTTGACCACGGCGACTTCACCAGCGCCCACCACTTGCTCTCCTCGGCTCGAGCTCTCGTGATGCAGTCCTCGACTGGTTCGGCCGAGGACTACGCTCGGGGGCTCGAGAACGAGCTGGCGCAAGTCCATTGGCGGAGGCAGTACCAAGCTCAAGTCCAAAGGGAGAAAGATCATTCAGTGACTCCAACGGCTCAGCCGCTAGTCGATGAGAACGGGGAGCCGCTCACACCGACCTCGGCTTGGCGAGCCGCAGAGCAGCTGGCTAAAGTGGCTATGATGAAGAAGTCATTGAACCGCTCAACTAGCGATCTACACGGCTTTGAAAATGCTAGATTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_79531.p1 GENE.R_Transcript_79531~~R_Transcript_79531.p1 ORF type:complete len:756 (+),score=65.40,VWA|PF00092.24|4.9e-14,VWA_2|PF13519.2|3.5e-13,VWA_3|PF13768.2|7.1e+03,VWA_3|PF13768.2|3.3e-11,zf-RING_11|PF17123.1|1.1e-09,zf-RING_2|PF13639.2|1e-06,zf-C3HC4|PF00097.21|1.2e-05 R_Transcript_79531:591-2858(+)
MGTGWRRAFCTTIPKERETDKNRRHHQHQEAVEQQQPSPSPRSCAKLSFFSSASNPTTPRVQQTSASQPSTPTLRCRTFPDRHSGLNPGPKLHCNTKSPKTKLSSNPSSPRSPFSILKNTLRLSRNGCGVCMQSVKTGQGMAIYTAECSHAFHFPCIASHVRKQGNLICPVCNVTWKDVPLLSFHKNNPSESEQIIEKRPISTAIAASAPATPTGLNRIHFEDKRIQSSISSVKITKKSSSSERSYNDDEPLLSPTSASRFNPIPEAEEETEDNEEFQGFCVTPNPPTTPKKMSVDPYATNDKKAHRNVEVKLLPEAAVVSASRSYETYAVALRVKAPSATAEILSPTRRAPVDLVTVLDVSGSMTGAKLQMLKRAMRLVISSLGSADRLSIVAFSASPQRLLPLKRMTAHGQKTARKIVDQLGCGQGTCVCEALRKAAKVLEDRREKNPVASIMLLSDGQDDRVGGGNNKSSQRQSGSKAQTRFTHIEIPVHSSGYGFPTQLPAEDAFAKCVGGLLSVVVQDLRVQLGFASGSAPAEIMAVYSCNSRPTLMSCDSVRLGDLYAEEERELLIELKVPTSAMGSHHVISVRCSYKDPVSQELMIGRERALLVPRPHAVRSSDPRIERLRNLFIHTRAVAESRRLVDHGDFTSAHHLLSSARALVMQSSTGSAEDYARGLENELAQVHWRRQYQAQVQREKDHSVTPTAQPLVDENGEPLTPTSAWRAAEQLAKVAMMKKSLNRSTSDLHGFENARF*

Click here to download the sequence:
Link to NCBI Protein BLAST