Transcript Information: R_Transcript_80004.p1


Annotated TAIR IDAT1G70610.1
Annotated Gene Nametransporter associated with antigen processing protein 1
Annotated Gene Symbol(s)ATTAP1, TAP1
Annotation TypeOrtholog
Chromosome Positionchr1:26622086-26626331 | Forward length=700
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5464314142192
Replicate 20.64155362383133
Replicate 30.50903861324783
Condition 2: 8 Hour
Replicate 11.054252518562
Replicate 20.80747628870948
Replicate 31.361370796529
Condition 3: 24 Hour
Replicate 11.179776204757
Replicate 20.55138147226443
Replicate 31.398381132774


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_80004.p1 GENE.R_Transcript_80004~~R_Transcript_80004.p1 ORF type:complete len:720 (+),score=100.28,ABC_membrane|PF00664.19|1.9e-38,ABC_tran|PF00005.23|4.6e+03,ABC_tran|PF00005.23|2.1e-33,SMC_N|PF02463.15|4.3e+03,SMC_N|PF02463.15|6.7,SMC_N|PF02463.15|1.7e-05,AAA_21|PF13304.2|1.1e-06 R_Transcript_80004:46-2160(+)
ATGGCTCTCACCGTCTTCACCCTCAAACCACCCTTAACTCTCTCTCATCCTCGCCCTTCATCTCCTTCTCCAATCTTCTTTCTCCACTCCTCACCAAACCCTAACCTCCACCTCCCCTTCCTCTCCTCCTCCTTTCCCCGAATTCGCCGTCACCGCCGGCGGTTCGTCCCCGTCAAAGTCAACTCAACCTCAGTAAACGGAATCTCAACCGCTAACACTCCAGAGAAGCAGCAATTGAGCGAAGAAAATGTCGATTTCGGAGGGAGAATTCGAAGCTCGTTTGAGAAATTGCTGTCGATTTTGCCAGGTGGAAGCTGGTGGAGATTATCCGATGAAGACGTTGACGTTGCTCTAGCAGCGAAGCCGGTAACTGTTTGGAGTGCTCTTCATCGGATGTGGCAACTTGTTTCTAACGATCGTTGGGTCATTTTTGCTGCCTTTTCTGCCCTAATTCTCACTGCGCTTTCGGAGATCTCCATACCACATTACTTGACAGCATCAATATTTTCAGCACAGAGTGGCAAAGTTATGGTCTTTCGTCAAAATGTGGTGCTTTTGGTAATCTTTTGCATCACTGCGGGAATATGCAGCGGCATAAGGGGATGCTGTTTCAGCATTGCAAACATGATCCTCGTCAAGAGAATGAGGGAAACATTGTATACTTCTCTTCTCCTTCAGGAAATATCTTTTTTTGATGCTTCAACAGTTGGTGAGCTCACTAGTAGGCTTGGAGCAGATTGTCAGCAAGTATCTCGTGTTATTGGAAATGATCTTAATCTAATATCACGCAACATTTTGCAGGGGGGTGGTGCCTTGATTTACCTGCTAATTTTGTCATGGCCGCTTGGTTTATGCACCTTGGGAATATGTATTACACTTTCTTCAATTATGATAGTTTATGGCCAGTACCAGAAAAAGGCAGCAAAGCTGACACAGGAATTCACTGCCTCTGCTAATGATGTTGCTCAAGAGACGCTATCTTTGATGCGAACAATTAGAGTTTATGGCACAGAAAATCAAGAACTGAAAAGGTACGAGATCTGGCTGCAAAAGTTAGCTGATATAAGCCTGAGACAAAGTACTGCATATGGACTCTGGAACGTTAGCTTCAATACTCTTTATCACTCGACACAGGTCATAGCTGTGCTGATTGGGGGAATGTCTATTCTGTCTGGTCGCCTATCTGCTGAGCTACTTACAAAATTTCTCTTGTACAGTGAATGGCTCATCTACTCCACATGGTGGATAGGGGATAATGTGTCATCATTGATGCAGTCAGTGGGAGCTAGTGAGAAAGTATTTCAGTTGATGGATCTCTTGCCCAGTGATCAGTTCACCTCAGGGGGACTGAAGCCACAGAAACTGACAGGACATATTGATTTTGTGAATGTGTCATTCTACTATCCTACAAGGCCAGAGGTGTCTGTATTGCAAGATCTGAACATTTCTATGCATCCCAATGAAGTAATTGCTCTTGTCGGTCTGAGTGGAAGTGGAAAGAGCACAATTGTAAATCTTCTTCTACGTCTTTATGAGCCAACCAGTGGCAAGATACTGATAGATGGCTTCTCTCTAAAAGAATTAGACACGAAATGGTTCAGAGAAAGAATTGGATATGTGGGCCAGGAACCTCGACTTTTCAGAATGGACATAAGCTCAAACATTAAATATGGATGCCCCAGAGATGTCACGCAGGAAGATGTCGAGTGGGCTGCTAAGCAAGCTTTTGCTCATGATTTTATTTCAGCCCTGCCTAATGGTTACAATACAATTGTTGATGATGATCTGCTCAGTGGCGGGCAAAAACAACGAATTGCCATTGCTAGAGCTATCCTTCGGGATCCAAGCATTTTGATCCTCGATGAAGCAACTAGTGCACTGGATGCGGAAAGTGAGCACAATGTTAAGGGTGTTCTGCGTGCAGTAAAAAATGACTCTCAGTCAAGGAGAACTGTCGTAGTAATTGCACATAGGCTTTCTACTATACAAGCTGCAGATAGAATAGTGGTGATGGATAGTGGACAAATTGTTGAGATGGGCAGTCACAAGGAGCTTCTCCTGAAGGAGGGTTTGTATGCAAGATTAACAAGGAGACAAGTGGATGCCGTGGTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_80004.p1 GENE.R_Transcript_80004~~R_Transcript_80004.p1 ORF type:complete len:720 (+),score=100.28,ABC_membrane|PF00664.19|1.9e-38,ABC_tran|PF00005.23|4.6e+03,ABC_tran|PF00005.23|2.1e-33,SMC_N|PF02463.15|4.3e+03,SMC_N|PF02463.15|6.7,SMC_N|PF02463.15|1.7e-05,AAA_21|PF13304.2|1.1e-06 R_Transcript_80004:46-2160(+)
MALTVFTLKPPLTLSHPRPSSPSPIFFLHSSPNPNLHLPFLSSSFPRIRRHRRRFVPVKVNSTSVNGISTANTPEKQQLSEENVDFGGRIRSSFEKLLSILPGGSWWRLSDEDVDVALAAKPVTVWSALHRMWQLVSNDRWVIFAAFSALILTALSEISIPHYLTASIFSAQSGKVMVFRQNVVLLVIFCITAGICSGIRGCCFSIANMILVKRMRETLYTSLLLQEISFFDASTVGELTSRLGADCQQVSRVIGNDLNLISRNILQGGGALIYLLILSWPLGLCTLGICITLSSIMIVYGQYQKKAAKLTQEFTASANDVAQETLSLMRTIRVYGTENQELKRYEIWLQKLADISLRQSTAYGLWNVSFNTLYHSTQVIAVLIGGMSILSGRLSAELLTKFLLYSEWLIYSTWWIGDNVSSLMQSVGASEKVFQLMDLLPSDQFTSGGLKPQKLTGHIDFVNVSFYYPTRPEVSVLQDLNISMHPNEVIALVGLSGSGKSTIVNLLLRLYEPTSGKILIDGFSLKELDTKWFRERIGYVGQEPRLFRMDISSNIKYGCPRDVTQEDVEWAAKQAFAHDFISALPNGYNTIVDDDLLSGGQKQRIAIARAILRDPSILILDEATSALDAESEHNVKGVLRAVKNDSQSRRTVVVIAHRLSTIQAADRIVVMDSGQIVEMGSHKELLLKEGLYARLTRRQVDAVV*

Click here to download the sequence:
Link to NCBI Protein BLAST