Transcript Information: R_Transcript_8076.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value3.7E-232
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.450751657996
Replicate 215.964507288209
Replicate 320.112015797929
Condition 2: 8 Hour
Replicate 123.152212172341
Replicate 224.163393013569
Replicate 328.829028632379
Condition 3: 24 Hour
Replicate 134.261651309319
Replicate 222.055258890577
Replicate 328.89749246244


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_8076.p1 GENE.R_Transcript_8076~~R_Transcript_8076.p1 ORF type:complete len:459 (+),score=91.26,AAA_12|PF13087.2|6.7e-27 R_Transcript_8076:547-1923(+)
ATGTCAAGAAATGGTGCTCTTAGACAGCAACTTTACAAGGAAATCGAGGTGGCGAGTGTTGATTCATTCCAGGGCAGAGAAAAGGATTACATTATCTTGTCTTGCGTCAGGAGTAATGAGCATCAGGGAATCGGGTTTCTTAATGATCCCCGCAGGCTCAATGTTGCTCTAACACGTGCCCGTTATGGTATTGTCATCTTGGGAAATCCGAAAGTTCTGAGCAAGCAGCCGCTCTGGAATAGTTTGTTGACACATTACAAGGAACATGAGTGCTTGGTGGAAGGACCTCTCAACAACTTGAAGCAAAGTATGGTTCAATTTCAGAAGCCCAAGAAGATCTACAATGATCGCAGACTTTTCTATGGAGCTGCTGCCGGTGTTGTGCCCAATGATAACTTTGCGCCAGTTTCAACGAGTGGTTCAAATGCTGATAGAAGAGGCGGTCGCGCTAGAGGTTATATGCCTCCTGGTTCACCCAATGGTACCCACAAACCAGGAGTCCATCCGGCTGGATTTCCTATGCCTCGAGTTCCTCTTGCTCCTTATCATGGTGCCCCACCGTCTCAGCCATATGCTATTCCCTCCCGAGGAGCTATACATGGTCCTATTGGAGCTGTTCCTCAAGTACCTCAGCCTGGGAGCCGTGGTTTTGGTGCAGGTCGTGGCAGTGCTGCTCCTATTGGCAGTCACCTGCCACACCATCAGGGCTCACAGCAACCTGTTGGAAATCTCGGGCCTAGTTTCAACTTTCCTCTGGAAAATCCTAATAGTCAACCTTCTGTTGGGGGTCCATTGTCCCAACCTGGATTCGTGTCTAATCAAATGCCTGTTCAAGGGCCTAACCAATCTTTCCGTGATGGGTTTTCTATGGGGGGCATGTCGCAGGACTTCTTGGGCGATGATTTCAAGAGTCAGGGTTCTCATGTGCCTTACAACATTGCGGAGTTCTCCACTCAGGCTTCACAGAGTGGGTATTCAGTTGACTACGCCACACAAGGAGGGCAATCTGGTTTTCCCGGGAGCTTCTTGAACCAGAACTCTCAAGCTGGATATTCTCGTTTTGGGAGTGGGAATGATTTCATGTCACAGGACTATATGGCTCATGGATCACAAGGACTTTTCACTCAAGTTGGCTTCAATGACCCATCACAGGAAGACTCTTCGCAGGGCCATTTTGGGGTGGCAAATGCGAACCATATTCAATCACAGGGTTTGATGAATCCTCTGTACTCCCAGCCCTTCACACACTACAACACACAGCCATTGAATTTGCAGAATACTCAACAACAGCAGACCCAGCCTCAGCAACAGCTACAGCAGCAGCCTGCACCGCAGGGCCAGAGCTCGCAGAATCAGAAAGTCCACTACAGTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_8076.p1 GENE.R_Transcript_8076~~R_Transcript_8076.p1 ORF type:complete len:459 (+),score=91.26,AAA_12|PF13087.2|6.7e-27 R_Transcript_8076:547-1923(+)
MSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGAAAGVVPNDNFAPVSTSGSNADRRGGRARGYMPPGSPNGTHKPGVHPAGFPMPRVPLAPYHGAPPSQPYAIPSRGAIHGPIGAVPQVPQPGSRGFGAGRGSAAPIGSHLPHHQGSQQPVGNLGPSFNFPLENPNSQPSVGGPLSQPGFVSNQMPVQGPNQSFRDGFSMGGMSQDFLGDDFKSQGSHVPYNIAEFSTQASQSGYSVDYATQGGQSGFPGSFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFNDPSQEDSSQGHFGVANANHIQSQGLMNPLYSQPFTHYNTQPLNLQNTQQQQTQPQQQLQQQPAPQGQSSQNQKVHYSG*

Click here to download the sequence:
Link to NCBI Protein BLAST