Transcript Information: R_Transcript_80768.p1


Annotated TAIR IDAT4G37880.1
Annotated Gene NameLisH/CRA/RING-U-box domains-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17810183-17811349 | Forward length=388
E-Value6.4E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 128.987215194929
Replicate 222.954504600201
Replicate 329.90931541052
Condition 2: 8 Hour
Replicate 124.16869053083
Replicate 234.236479710209
Replicate 335.268673485208
Condition 3: 24 Hour
Replicate 130.749187400837
Replicate 224.112226040994
Replicate 325.176530779747


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_80768.p1 GENE.R_Transcript_80768~~R_Transcript_80768.p1 ORF type:complete len:386 (+),score=65.39,CLTH|PF10607.5|8.8e+02,CLTH|PF10607.5|5.6e-36,zf-RING_UBOX|PF13445.2|6.4e+03,zf-RING_UBOX|PF13445.2|2.9e-17,zf-RING_5|PF14634.2|2.9e+03,zf-RING_5|PF14634.2|3.8e-07 R_Transcript_80768:208-1365(+)
ATGGAGCTCAAGACTGTGAAAGATGCATTTGACCATGTTACTAAGAAGCAAAAAGTGTGTTCTTCCAAATGCCATGAAGCAATAGAACAGATAGGGCTAGAAATTGAGCAAGCTTTAGTGAAATTGCAGTCAACTGATCCTGCCACATCCTGCCTGGAAATTAAGACCATACTTGCTAATCTCGAGACAAAGTTAAAGGAGATTGCTCCACTCAGCCAGCTAGAATCCAGTCAAAAGGAGTTGAACGTAGCGTTGAGCAAGTACCCAAAGCAGCTTGAAAAATCTTTCAACCCAGATATATCAAAAGCTTACAAAAATATTGATTTTGATGTCCACACAATCAATCAGATCATAGCCAGCCATCTATACAGGAAAGGCCTATTTGATTTGGGAGACTGCTTTGCAAATGAGGCTGGAGAGCAAGAAGCTGCTGCCATGAAGTCACCCTTCATCGAGATGTACCATATCCTTCAAGCCATGAAGTCACATAACCTGGAGCCAGCCCTGAATTGGGCCACTGTTAACTGCGAGAAACTCAGGCAAACTGGATCAGATCTTGAGCTCAAACTTCACAGGTTACAATATGTAGAAATTTTGCAGAAACATGGTAAAGAAGATGCTCTGAAATACGCAAGGTCCTACCTTGCTCCTTTTGCTTCCAGTCATATGGCGGAAATCCAGAAGCTGATGGCATGTCTGATATGGGCTGATAAACTTCCTTGCTCCCCGTATGCTGATTTACTCTCTCAGAGCAACTGGGAAAAGTTGGCCGAGGAATTTACTAGGCATTTCTGCAATCTTCTAGGGCAATCTTTCGAGAGCCCATTGAGCGTGACTGTAGCAGCAGGAATCCAGGGCCTGCCTACCCTTCTCAAGCTGATGAACGTGGTAATGGGGAAGAAACAAGAATGGCAAACTATGAAGCAGCTCCCAGTACCGATTGATTTGGATAAAGAGTTTCAGTTTCACACGATTTTCGTATGCCCTGTTAGCAGGGACCAGGCTACGGAAGAGAACCCGCCAATGCTGATGTCATGTGGGCATGTCCTTTGCAAGCAGTCCATTATGAAGCTTTCCAAGAGCAGTACAAAGTCTTTCAAATGCCCTTACTGCCCAACGGAGATTGAGGCTTCTCAGTGTAGACAGTTAGTTTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_80768.p1 GENE.R_Transcript_80768~~R_Transcript_80768.p1 ORF type:complete len:386 (+),score=65.39,CLTH|PF10607.5|8.8e+02,CLTH|PF10607.5|5.6e-36,zf-RING_UBOX|PF13445.2|6.4e+03,zf-RING_UBOX|PF13445.2|2.9e-17,zf-RING_5|PF14634.2|2.9e+03,zf-RING_5|PF14634.2|3.8e-07 R_Transcript_80768:208-1365(+)
MELKTVKDAFDHVTKKQKVCSSKCHEAIEQIGLEIEQALVKLQSTDPATSCLEIKTILANLETKLKEIAPLSQLESSQKELNVALSKYPKQLEKSFNPDISKAYKNIDFDVHTINQIIASHLYRKGLFDLGDCFANEAGEQEAAAMKSPFIEMYHILQAMKSHNLEPALNWATVNCEKLRQTGSDLELKLHRLQYVEILQKHGKEDALKYARSYLAPFASSHMAEIQKLMACLIWADKLPCSPYADLLSQSNWEKLAEEFTRHFCNLLGQSFESPLSVTVAAGIQGLPTLLKLMNVVMGKKQEWQTMKQLPVPIDLDKEFQFHTIFVCPVSRDQATEENPPMLMSCGHVLCKQSIMKLSKSSTKSFKCPYCPTEIEASQCRQLVF*

Click here to download the sequence:
Link to NCBI Protein BLAST