Transcript Information: R_Transcript_8082.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value1E-123
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2574825894746
Replicate 25.1234991446469
Replicate 38.7681292234076
Condition 2: 8 Hour
Replicate 16.4436486703277
Replicate 27.8102601646246
Replicate 39.5534792738879
Condition 3: 24 Hour
Replicate 110.325520954087
Replicate 25.3819052795189
Replicate 37.2260843224685


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_8082.p1 GENE.R_Transcript_8082~~R_Transcript_8082.p1 ORF type:5prime_partial len:209 (+),score=27.56,AAA_12|PF13087.2|1.6e-35 R_Transcript_8082:3-629(+)
GAGAAGATAGTAACTACTTTCTTGAGGAGCGGTGTGGTCCCTAGTCAGATTGGGGTGATAACACCGTATGAGGGACAAAGGGCCTATATTGTGAATTATATGTCAAGAAATGGTGCTCTTAGACAGCAACTTTACAAGGAAATCGAGGTGGCGAGTGTTGATTCATTCCAGGGCAGAGAAAAGGATTACATTATCTTGTCTTGCGTCAGGAGTAATGAGCATCAGGGAATCGGGTTTCTTAATGATCCCCGCAGGCTCAATGTTGCTCTAACACGTGCCCGTTATGGTATTGTCATCTTGGGAAATCCGAAAGTTCTGAGCAAGCAGCCGCTCTGGAATAGTTTGTTGACACATTACAAGGAACATGAGTGCTTGGTGGAAGGACCTCTCAACAACTTGAAGCAAAGTATGGTTCAATTTCAGAAGCCCAAGAAGATCTACAATGATCGCAGACTTTTCTATGGTGTGGCAGCTGGTGTTGTGCCCAAGGATAACTTTGTGCTAGTTTCAACGAGTGGTTCAAATGCTGATAGAAGAGGCGGTCGTGCTAGAGGTTATATGCCTCGTGGTCCACCCAATGGTACCCACAAACCAGGAGTTCATCCTTTTTTTTGCAGTATTATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_8082.p1 GENE.R_Transcript_8082~~R_Transcript_8082.p1 ORF type:5prime_partial len:209 (+),score=27.56,AAA_12|PF13087.2|1.6e-35 R_Transcript_8082:3-629(+)
EKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGVAAGVVPKDNFVLVSTSGSNADRRGGRARGYMPRGPPNGTHKPGVHPFFCSII*

Click here to download the sequence:
Link to NCBI Protein BLAST