Transcript Information: R_Transcript_80854.p1


Annotated TAIR IDAT5G06400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1955959-1959051 | Forward length=1030
E-Value1.6E-165
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9061064847405
Replicate 21.0516930441079
Replicate 31.516188356096
Condition 2: 8 Hour
Replicate 11.0074685040906
Replicate 21.8000709890042
Replicate 33.5394017130987
Condition 3: 24 Hour
Replicate 12.3409570876192
Replicate 21.8149229140726
Replicate 32.9757881148555


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_80854.p1 GENE.R_Transcript_80854~~R_Transcript_80854.p1 ORF type:5prime_partial len:559 (+),score=97.63,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|3.3e-13,PPR_2|PF13041.2|5.5e-09,PPR_2|PF13041.2|4.7e-07,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|9.3e-05,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|4.4e-07,PPR_1|PF12854.3|3.9e-06,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|2.1e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.026,PPR|PF01535.16|35,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.027,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.034,PPR|PF01535.16|1.6e+04,PPR_3|PF13812.2|78,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.32,TPR_19|PF14559.2|20,TPR_19|PF14559.2|37,TPR_19|PF14559.2|1.4e+02,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.4e+02 R_Transcript_80854:1-1677(+)
TGGGGCTTTGTCATCAAGAGTTCAAGACCCCCCTTCTCAAAACTTCATTCTTCATCTACTAATCCTAACACCATTCATTCAATTCAAAAACCAAACCAATTTCACTCCCAAATGTTGTTGGGAAGGGCAACTCGTGATCATCATTTACTAACACCATCATCCATCGCATCATCATCTCCATTTCACAAGCTTTCTGCTTTTAGACTGTTATTATTACATTCACTTGAAACCCCAATTTCTTCAACTTCCCCAAATCCCACAAAAATTTTGCTTCTCAAAAATTCCAACTTACCCAGTTCCCCTATTGCTCTTCCTTCACTTTCTAGCTCCTTCAGCTCATCCCCCACTTTGTTGGGTCATCCTCCTCTCCATGCACAAGCTTCCTTTGATGATGAAAAAAGCACTTACAATGATGAAGATGTGCATAAGATTTTTGCCATTTTGTCATCATCAAAGGATTGGTCAGCAATGCAAGAAGCTGTAGAGAAATGCACGATTCATTATAGCCCAGAACTTGTCCTCAAGATCCTGTACAACTGTAGCCAGTATGGTAATGCTGTACTACATTTTTTCTCATGGGTTAGAAAACAACCTGGTTATAAACACACTACAGAATGTTACAACATGGCTATGAAGATAGCTGGTCGAGGGAAAGATTTTAAATTCATGAGAAATCTCTTTTATGAAATGCAAAGAAATGGTTGCTTGGTAACTTCTGATACATGGACAATCATGATAATGTCATATGGTCGGGTGGGGCTGACTGATATTGCATTGAGGAACTTTAATGAGATGAAAGTTACTGGTTGCCAGCCGACCGCAAATACATACAAGTATCTGATCTTGTCCCTTTGTGGGAGAAAAGGTAGGAATGTGGATGAAGCCATCAAAGTATTTAAGGAGATGAGTAAGAAAGGATTGGTTCCAGATAAAGAACTGGTTGAAGGTTTCTTTGATAGTCTGTGCCAAGTAGGAAAGTGGGCAGATGCAAGAAAGTGCTTGGAATTTTTGCAAAAAGTCGGTTTTACAAAGGTTTTAAGCTATTCTTTGCTTATTAGGGCTCTTTGTCGTAGAGGAAAATTGGAAGAAGCATTGTCCCTGACAAATGATGTTAAAGAAGAAAGATCCACCCTTGATACTTATGTCTATGGAAGCCTTGTTCATGGGCTTTTAGAGAAGGGAAGAATAGATGAAGCCTTGGCCAAAATTGAGACCATGAAACGGGGAGGTATTCATCCAACTGTCCATGTCTATACGTCATTAATATCTCATTTCTGTAGGGACAAACAGATAGATAAAGCTCTGGATGTATTTAGCACCATGTGGGAAGAGCATTGTCATCCTACTATTGTTACTTACACTGCATTGGTACGTGGGTATATGAACATGGGGAATGTTGTTGAAGCTCAAAAGTTGTTCCTTCGGATAAGGCTAAAAGGACCATCTCCAGATTTTAGGGCTTACTCAATGTTTATTGCGGGCCTTTGTGAGATGGGGAAATCTGAAGCAGCACTGCCGTTGTTATCTGAAATGTTAGACGATGGCATTATGCCTAGCACTGTTAATTTCCGAACTGTGTTCTTTGGACTGAACAAGGAAGGCAAACACCATTTAGCTCAAACAGTAATGCAACTAAAGCGTGTCATTGCAAATAAAAGGAAGTTTCTAACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_80854.p1 GENE.R_Transcript_80854~~R_Transcript_80854.p1 ORF type:5prime_partial len:559 (+),score=97.63,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|3.3e-13,PPR_2|PF13041.2|5.5e-09,PPR_2|PF13041.2|4.7e-07,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|9.3e-05,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|4.4e-07,PPR_1|PF12854.3|3.9e-06,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|2.1e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.026,PPR|PF01535.16|35,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.027,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.034,PPR|PF01535.16|1.6e+04,PPR_3|PF13812.2|78,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.32,TPR_19|PF14559.2|20,TPR_19|PF14559.2|37,TPR_19|PF14559.2|1.4e+02,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.4e+02 R_Transcript_80854:1-1677(+)
WGFVIKSSRPPFSKLHSSSTNPNTIHSIQKPNQFHSQMLLGRATRDHHLLTPSSIASSSPFHKLSAFRLLLLHSLETPISSTSPNPTKILLLKNSNLPSSPIALPSLSSSFSSSPTLLGHPPLHAQASFDDEKSTYNDEDVHKIFAILSSSKDWSAMQEAVEKCTIHYSPELVLKILYNCSQYGNAVLHFFSWVRKQPGYKHTTECYNMAMKIAGRGKDFKFMRNLFYEMQRNGCLVTSDTWTIMIMSYGRVGLTDIALRNFNEMKVTGCQPTANTYKYLILSLCGRKGRNVDEAIKVFKEMSKKGLVPDKELVEGFFDSLCQVGKWADARKCLEFLQKVGFTKVLSYSLLIRALCRRGKLEEALSLTNDVKEERSTLDTYVYGSLVHGLLEKGRIDEALAKIETMKRGGIHPTVHVYTSLISHFCRDKQIDKALDVFSTMWEEHCHPTIVTYTALVRGYMNMGNVVEAQKLFLRIRLKGPSPDFRAYSMFIAGLCEMGKSEAALPLLSEMLDDGIMPSTVNFRTVFFGLNKEGKHHLAQTVMQLKRVIANKRKFLTS*

Click here to download the sequence:
Link to NCBI Protein BLAST