Transcript Information: R_Transcript_80886.p1


Annotated TAIR IDAT1G09820.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3190594-3192414 | Reverse length=606
E-Value7E-160
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0218388544296
Replicate 22.09567593609
Replicate 32.2863598730623
Condition 2: 8 Hour
Replicate 11.7061713805048
Replicate 22.1897662066698
Replicate 33.5893015351048
Condition 3: 24 Hour
Replicate 13.2426281395062
Replicate 22.0767663738773
Replicate 33.2151430613521


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_80886.p1 GENE.R_Transcript_80886~~R_Transcript_80886.p1 ORF type:complete len:531 (+),score=100.84,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|2.1e-16,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|9.8e-19,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|1.9e-10,PPR_2|PF13041.2|4.7e-16,PPR_2|PF13041.2|3.1e-11,PPR_2|PF13041.2|2.2e-13,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|1.7e-10,PPR_1|PF12854.3|7.9e-12,PPR_1|PF12854.3|3.9e-11,PPR_1|PF12854.3|1.5e-11,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|0.00057,PPR|PF01535.16|89,PPR|PF01535.16|1.4e+04,PPR|PF01535.16|0.082,PPR|PF01535.16|0.00054,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|6.2e-07,PPR|PF01535.16|9.1e-09,PPR|PF01535.16|0.00026,PPR|PF01535.16|0.001,PPR|PF01535.16|7.7,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|6,PPR_3|PF13812.2|2.1e+03,ATP13|PF12921.3|1.6e+03,ATP13|PF12921.3|2e+02,ATP13|PF12921.3|8.4,ATP13|PF12921.3|12,ATP13|PF12921.3|16,ATP13|PF12921.3|2.6e+02,ATP13|PF12921.3|2.2e+03,MRP-S27|PF10037.5|0.26,MRP-S27|PF10037.5|1.2,MRP-S27|PF10037.5|14 R_Transcript_80886:284-1876(+)
ATGCAGGCCCCTTGTAAGCTATTCAATATCTATAAAAGATTCCCTTTTTCTTCGATTCTTTTACTTAATAGCAATGTCAATCCTGCAAAAGATCATGTCAGGTTATTATCTACTTCAAATTCAGATAAAGTAAATGAAAATCCAGAAAAAAGATTGGAACTTTCATCTATTTCTGAGCTTATAGCTAAGCAACACTGGAGGGAAGTGAAATTGGTGATAAAAGAGAGGGACCCAAGTGAGATTTTGCAACAATTAATGGATTCTGAGACTGATCCACTTGTTATTATTCAGTATTTTAGGTGGTTAGAGAGAGAAGTTGGTGTCTTGCATAGTGTTGATATGTATTGTAAGTTGTTCCATTTGTTGGGTAATGGGGGTTTGTATGGGCAAATTAGGAAATTGCTAAATGGGTTTGTAAAGAATGGGAAGTACTCGAGTTCAGAGATTTTTCATAGGCTTTCACTGTTTGGCGAATCGTTTCGAGCTAATTCGGTTCTTGTTGATATGTTGGTGGTTGCATATGTGAATAATTCTGAGGTCGGATTGGCACTTGAAGCTGTGAAGAGGGCTTGGGATTACGGGTTTAGGTTGTCGGCTTTGTCGTGTAATCCGTTGCTAAGTGCATTGGTTGATCAAGGTAGGATAAAAGATATGGAGGATGTGTTTAAGGGGATGATTAGGAAAAGGATTCGACCTGATCTAATAACGTTTAATACGGTCATTAGTGGGTTTTGTAAGGTTGGTCAATTGCAAAAGGCGGGTGACCGATTGGAGGACATCAAAGCTTGGGGTTTTTCTCCTACTGTGGTGACATATAATGCTTTGATTAATGGGTACTGCAAGAAGGGAAGGGTTGGGAAGATGTATAAAGCTGATGCTTTGTTGAGAGAAATGGTGTCGATGAACATTTGTCCGAATGAAATCACCTACAATACTCTTATTGATGGGTTTGGTAAGGATAATAACTTGCCTGCTGCTATGAAGGTGTTTGATGAAATGCAGAGTCGAGGGTTAAAACCTAGTGCTGCCACATTCAATGCATTGATCAGGGGGTTTTGTTCTGATGGGAAGATTGATGATGCTATAGGTTTGCTAAATGTCATGTCTATCATGGGTGTAGAGCCGGATATTGTGACATATAATATCCTTATCAATGGTTATGCTAAGAAGGGAATGTTACAAGAAGCTAGAAAGTTGTTGGCCGATGCTGATGGAAAGGGTTTGGTGCCCACTGTTATAACTTTCAATACCATAATTGACGCTTACTGCAAAGCCGGGATGATGGATGAAGCTGTTGCATTGCAGGAGTTAATGAAGAAGAGGAATCTTTGCCCTGATATTTCAACTTATAACTGCTTGATAGGTGGCTTCTACAGAAATGGAGATTTTCAAGCAGGTGATGATCTTGTAAACAAAATCAAGGAAATGGGGCATAAACCTGACACAGTGACATATAACATAAGGGCAGGTGCTCTCTGCCAGAAAGGGGAGACAAGAAATGCAGTTAGGCTATTAAATGAAATGTTTGAGGTGGGTTTGACTCCGAATCATGTGACCTACAATACCTTGATTGGTGGCTACTGGCTACTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_80886.p1 GENE.R_Transcript_80886~~R_Transcript_80886.p1 ORF type:complete len:531 (+),score=100.84,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|2.1e-16,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|9.8e-19,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|1.9e-10,PPR_2|PF13041.2|4.7e-16,PPR_2|PF13041.2|3.1e-11,PPR_2|PF13041.2|2.2e-13,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|5.2e-08,PPR_1|PF12854.3|1.7e-10,PPR_1|PF12854.3|7.9e-12,PPR_1|PF12854.3|3.9e-11,PPR_1|PF12854.3|1.5e-11,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|0.00057,PPR|PF01535.16|89,PPR|PF01535.16|1.4e+04,PPR|PF01535.16|0.082,PPR|PF01535.16|0.00054,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|6.2e-07,PPR|PF01535.16|9.1e-09,PPR|PF01535.16|0.00026,PPR|PF01535.16|0.001,PPR|PF01535.16|7.7,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|6,PPR_3|PF13812.2|2.1e+03,ATP13|PF12921.3|1.6e+03,ATP13|PF12921.3|2e+02,ATP13|PF12921.3|8.4,ATP13|PF12921.3|12,ATP13|PF12921.3|16,ATP13|PF12921.3|2.6e+02,ATP13|PF12921.3|2.2e+03,MRP-S27|PF10037.5|0.26,MRP-S27|PF10037.5|1.2,MRP-S27|PF10037.5|14 R_Transcript_80886:284-1876(+)
MQAPCKLFNIYKRFPFSSILLLNSNVNPAKDHVRLLSTSNSDKVNENPEKRLELSSISELIAKQHWREVKLVIKERDPSEILQQLMDSETDPLVIIQYFRWLEREVGVLHSVDMYCKLFHLLGNGGLYGQIRKLLNGFVKNGKYSSSEIFHRLSLFGESFRANSVLVDMLVVAYVNNSEVGLALEAVKRAWDYGFRLSALSCNPLLSALVDQGRIKDMEDVFKGMIRKRIRPDLITFNTVISGFCKVGQLQKAGDRLEDIKAWGFSPTVVTYNALINGYCKKGRVGKMYKADALLREMVSMNICPNEITYNTLIDGFGKDNNLPAAMKVFDEMQSRGLKPSAATFNALIRGFCSDGKIDDAIGLLNVMSIMGVEPDIVTYNILINGYAKKGMLQEARKLLADADGKGLVPTVITFNTIIDAYCKAGMMDEAVALQELMKKRNLCPDISTYNCLIGGFYRNGDFQAGDDLVNKIKEMGHKPDTVTYNIRAGALCQKGETRNAVRLLNEMFEVGLTPNHVTYNTLIGGYWLL*

Click here to download the sequence:
Link to NCBI Protein BLAST