Transcript Information: R_Transcript_81016.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value1E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.1344060584434
Replicate 28.5264164127099
Replicate 39.4185063212607
Condition 2: 8 Hour
Replicate 16.0903928041371
Replicate 26.6969138509135
Replicate 37.6476329009752
Condition 3: 24 Hour
Replicate 15.9433917188473
Replicate 26.7173377331707
Replicate 38.7773028947456


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81016.p1 GENE.R_Transcript_81016~~R_Transcript_81016.p1 ORF type:5prime_partial len:197 (+),score=21.18,DDE_Tnp_4|PF13359.2|5.2e-23,Plant_tran|PF04827.10|3.3e-10 R_Transcript_81016:3-593(+)
AACCTTCGATTCACTTACGTCTTATCAGGCTGGGAAGGATCTGCATCTGATTCTCGTGTCCTACGTGATGCTTTAAGAAGAACTAATGGACTTAAGGTTCCAACAAATCGATATTTTCTAGTAGATTTGGGTTTTACCAATGATCAAGGATTCCTAGCTCCATACAAGGGGACTCGGTACCACTTGAACTTATGGCAAGGGAATACTCCACAAAATTATAAGGAGCTCTTTAATCTAAAACATTCATCCGCTCGAAACACAATTGAACGTGCGTTTGGATTGTTAAAGAAAAGATGGGCTATCTTGAGGACCTCGAGCTTTTTTGAGAAAAGGACCCAAATTCGGATTATCAATGCTTGTTTTGTTCTTCACAATTTTATACGAGATGAAAACATGGAAGAGGATCACATATTACATGCGGTGGATCATGAACTACAACAAGAGGAGGGACTTGATAATGAAGAACAAGAAGATGATTACATATCATGCGTTAAAGGAACGGAGGAATGGGATAAATTTCGAGATGATCTTGCTAATAAGATGTTTAATGATTATCAAGCTCATAGAGAGCTGATTAGGACATTTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81016.p1 GENE.R_Transcript_81016~~R_Transcript_81016.p1 ORF type:5prime_partial len:197 (+),score=21.18,DDE_Tnp_4|PF13359.2|5.2e-23,Plant_tran|PF04827.10|3.3e-10 R_Transcript_81016:3-593(+)
NLRFTYVLSGWEGSASDSRVLRDALRRTNGLKVPTNRYFLVDLGFTNDQGFLAPYKGTRYHLNLWQGNTPQNYKELFNLKHSSARNTIERAFGLLKKRWAILRTSSFFEKRTQIRIINACFVLHNFIRDENMEEDHILHAVDHELQQEEGLDNEEQEDDYISCVKGTEEWDKFRDDLANKMFNDYQAHRELIRTFD*

Click here to download the sequence:
Link to NCBI Protein BLAST