Transcript Information: R_Transcript_81017.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2264835424119
Replicate 20.82989329708688
Replicate 31.0864855776831
Condition 2: 8 Hour
Replicate 11.2581669735739
Replicate 21.767658643572
Replicate 32.4393468817911
Condition 3: 24 Hour
Replicate 10.90742321058119
Replicate 21.3076240448959
Replicate 30.43256333373315


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81017.p1 GENE.R_Transcript_81017~~R_Transcript_81017.p1 ORF type:internal len:253 (+),score=20.65,DDE_Tnp_4|PF13359.2|3.1e-31,Plant_tran|PF04827.10|1.5e-11,DDE_Tnp_1|PF01609.17|2.5e-06 R_Transcript_81017:1-756(+)
CTATTTTTACATTGTCTTGCTCATAACTTGAAGAATAGGACTATCAAAGCTATTTTTATTCGCTCAGGAGAGACTATTAGTCGCCAATTCCACACTGTGCTTCAAGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAACTAGGTTTATGGTTGATAACAGATGGAAATGGTTTGAGGGGGTTGTTGGAGCACTTGATGACACACATATTCATATCACAGTTCCCGTTGGAGATCGACCTCGATATCGAGATAGGAAGGGTAACCTTAGCACAAATGTGCTTGTCGCATGTGATTCAAACCTTCGATTCACTTACGTCTTATCAGGCTGGGAAGGATCTGCATCTGATTCTCGTGTCCTACGTGATGCTTTAAGAAGAACTAATGGACTTAAGGTTCCAACAAATCGATATTTTCTAGTAGATTTGGGTTTTACCAATGATCAAGGATTCCTAGCTCCATACAAGGGGACTCGGTACCACTTGAACTTATGGCAAGGGAATACTCCACAAAATTATAAGGAGCTCTTTAATCTAAAACATTCATCCGCTCGAAACACAATTGAACGTGCGTTTGGATTGTTAAAGAAAAGATGGGCTATCTTGAGGACCTCGAGCTTTTTTGAGAAAAGGACCCAAATTCGGATTATCAATGCTTGTTTTGTTCTTCACAATTTTATACGAGATGAAAACATGGAAGAGGATCACATATTACATGCGGTGGATCATGAACTACAACAAGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81017.p1 GENE.R_Transcript_81017~~R_Transcript_81017.p1 ORF type:internal len:253 (+),score=20.65,DDE_Tnp_4|PF13359.2|3.1e-31,Plant_tran|PF04827.10|1.5e-11,DDE_Tnp_1|PF01609.17|2.5e-06 R_Transcript_81017:1-756(+)
LFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVLKIGKFYMKQVDSTTRFMVDNRWKWFEGVVGALDDTHIHITVPVGDRPRYRDRKGNLSTNVLVACDSNLRFTYVLSGWEGSASDSRVLRDALRRTNGLKVPTNRYFLVDLGFTNDQGFLAPYKGTRYHLNLWQGNTPQNYKELFNLKHSSARNTIERAFGLLKKRWAILRTSSFFEKRTQIRIINACFVLHNFIRDENMEEDHILHAVDHELQQE

Click here to download the sequence:
Link to NCBI Protein BLAST