Transcript Information: R_Transcript_81026.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85294210068779
Replicate 20.7849084267775
Replicate 31.0704082988856
Condition 2: 8 Hour
Replicate 10.91535943728019
Replicate 21.2538812247394
Replicate 30.50892366225384
Condition 3: 24 Hour
Replicate 10.64367683815993
Replicate 20.61837174459563
Replicate 31.2273479263681


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81026.p1 GENE.R_Transcript_81026~~R_Transcript_81026.p1 ORF type:3prime_partial len:107 (+),score=6.90 R_Transcript_81026:94-411(+)
ATGATAACATATGCAAGGAGCAATTACGACTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGGTTGGTGACTTCAAGAAATGTTACGATTAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCACAACTTGAAGAATAGGACTATCAAGGCTATTTTTATTCGCTCAGGAGACACTATTAGTCGCCAATTCCACACTGTGCTTCAAGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAACTAGGTTTATGGTTGATAACAGATGGAAATGGTTTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81026.p1 GENE.R_Transcript_81026~~R_Transcript_81026.p1 ORF type:3prime_partial len:107 (+),score=6.90 R_Transcript_81026:94-411(+)
MITYARSNYDLIDIVLRSCVPFYNPKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGDTISRQFHTVLQAVLKIGKFYMKQVDSTTRFMVDNRWKWFE

Click here to download the sequence:
Link to NCBI Protein BLAST