Transcript Information: R_Transcript_81027.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1463212193785
Replicate 21.6229024476366
Replicate 30.77462397668148
Condition 2: 8 Hour
Replicate 10.59144601321848
Replicate 21.40430658906
Replicate 30.78920046175596
Condition 3: 24 Hour
Replicate 11.8854237819854
Replicate 21.1720185883882
Replicate 30.52868851900718


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81027.p1 GENE.R_Transcript_81027~~R_Transcript_81027.p1 ORF type:3prime_partial len:207 (+),score=22.07,DDE_Tnp_4|PF13359.2|1.6e-28,Plant_tran|PF04827.10|2e-10,DDE_Tnp_1|PF01609.17|9e-06 R_Transcript_81027:238-855(+)
ATGACAGTTCCCATTGGAGATCAACCTAGATATCGAGATAGGAAGGATAACCTTAACACAAATGTGCTTGCCGCATGTGATCCAAACCTTCGATTCACTTACGTCTTATCAGGCTGGGAAGGATCTGCATCTGATTCTCGTGTCCTACGTGATGCTTTAAGAAGAACTAATGGACTTAAGGTTCCAACAAATCGATATTTTCTAGTAGATTTGGGTTTTACCAATGATCAAGGATTCCTAGCTCCATACAAGGGGACTCGGTACCACTTGAACTTATGGCAAGGGAATACTCCACAAAATTATAAGGAGCTCTTTAATCTAAAACATTCATCCGCTCGAAACACAATTGAACGTGCGTTTGGATTGTTAAAGAAAAGATGGGCTATCTTGAGGACCTCGAGCTTTTTTGAGAAAAGGACCCAAATTCGGATTATCAATGCTTGTTTTGTTCTTCACAATTTTATACGAGATGAAAACATGGAAGAGGATCACATATTACATGCGGTGGATCATGAACTACAACAAGAGGAGGGACTTGATAATGAAGAACAAGAAGATGATTACATATCATGCGTTAAAGGAACGGAGGAATGGGATAAATTTCGAGATGATCTTGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81027.p1 GENE.R_Transcript_81027~~R_Transcript_81027.p1 ORF type:3prime_partial len:207 (+),score=22.07,DDE_Tnp_4|PF13359.2|1.6e-28,Plant_tran|PF04827.10|2e-10,DDE_Tnp_1|PF01609.17|9e-06 R_Transcript_81027:238-855(+)
MTVPIGDQPRYRDRKDNLNTNVLAACDPNLRFTYVLSGWEGSASDSRVLRDALRRTNGLKVPTNRYFLVDLGFTNDQGFLAPYKGTRYHLNLWQGNTPQNYKELFNLKHSSARNTIERAFGLLKKRWAILRTSSFFEKRTQIRIINACFVLHNFIRDENMEEDHILHAVDHELQQEEGLDNEEQEDDYISCVKGTEEWDKFRDDLA

Click here to download the sequence:
Link to NCBI Protein BLAST