Transcript Information: R_Transcript_81111.p1


Annotated TAIR IDAT4G30790.1
Annotated Gene NameINVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:14993383-14997785 | Reverse length=1148
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.686290423337
Replicate 26.6646081781176
Replicate 310.207776965925
Condition 2: 8 Hour
Replicate 19.3959906163611
Replicate 212.040474837562
Replicate 315.503497665158
Condition 3: 24 Hour
Replicate 110.21023610569
Replicate 27.2542496085718
Replicate 310.140722595875


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81111.p1 GENE.R_Transcript_81111~~R_Transcript_81111.p1 ORF type:3prime_partial len:1131 (+),score=308.18,ATG11|PF10377.5|5.1e+03,ATG11|PF10377.5|2.4e-14,APG17|PF04108.8|0.087,APG17|PF04108.8|1.6e-06,APG17|PF04108.8|1.1e+02,APG17|PF04108.8|2.8e+02,APG17|PF04108.8|1.4e+02 R_Transcript_81111:40-3429(+)
ATGAGCTCAGTTGTGAGTGGAGGGTCAGTTTCGAGTGGGAAGCTTTTGATACACATTGCAGAGAATGGTCATTCATTTGAGGTTGATTGTGATGAATCTACTTCTGTGGAGGAGGTTCAAACGTTTATTGAATCAATGGCTGGGATTCAATTGAATGACCAGCTTTTACTTTGTGGTGACTTGAAGCTTGAAACTCATGAGCCACTTGGAGCATATAAGCTACCTTCGGATGAGCAAGAAGTGTTTTGTTTCAATAAAGCTAGATTGCAAACCAATGCTGTTCCCCCGGATGCAGAACAAGTTAAAATCCATGACGTTCCTGAACCGCCTTCACCGTTTTCTAACCAGGATCCCCATCCATTGGATAATGCCATGGACCCTGCACTTAAGGCTTTACCTTCTTATGAGCGCCAGTTTCGCTACCATTACCATTGTGGACATGCCATATATAGTCGAACAGTCGGGAAGTTAGATGTCTGTGAGAGGCTTCTGAGGGAGCAGAAGGTGCAAGAAAGGGCATTGGAGATTGCCAGACGGAACTTGGATTATTTCTTTAGGATACTTAATCAAAATTACTTGGATTTTCTTAAATGTTATTCGCAGCAGCACCGTGTACATTCCGATCTGTTGGTCAACTTTGTGAAGGACATTGAAAAGTTAAGATCCTGCAAACTTATCGCAGCTCTTCAGACTCCTTCTCGCAAGTGTTTGTTGGATCTTGTCAAGGAAGAGAACTTGAGGAGATGGTTGGAGAATTGTACTTCTTCTCACAAGCAATTTGAGAACAAGGTCTCTCAATTTAAGCATGTGTTTGGAAAACTGAAACATGATGTTGAAGATCTATTTTCAAGCAAAGCAGCCTTGCCAATCAGGGATCTAGAGTTGATGATAAGGGAACATTATCAACACACCAATGAACAAAGGAGTATTATGCAGTCTTTAAGCAAGGATGTCAGTACCGTGAAAAAATTGGTGGATGATTGTCTGGCTAGTCAGTTGTCCTCTTCTCTCCGTCCTCATGATGCAGTTTCTGCCTTGGGGCCTATGTATGATGTCCATGACAAAAATCACCTGCCAAAGATGAGGGCATGTGACAATTCAATTTCTGATCTGCTTGAGTTTTGTGCAAACAAGAAGGATGAAATGAATATTTTTGTGCACAGTTACATGCAAAAGATAGCTTATATTCAACATAACATCAAGGATGTTCGTTTACAATTTAATGCCTTTTCTGAGGCAATAAAACGACAGGATGCTGTATTCGAGGGCTTGAAAGTGGTCCATGGTATTGGCCCTGCTTACAGAGCCTGTCTTGCAGAAACGGTGCGAAGAAAGGCTTCTATGAAGCTTTACATGGGCATGGCTGGACAGTTGGCGGAGAAACTTGCTGCAAAGAGAGAAGATGAGGTGAGGAGACGAGAAGAATTTTTGAAGGCGCAGAGCGCATATATACCCAGGGATATGTTAGCTTCCATGGGATTGTTTGATACTCCTAGCCAATGTGATGTCAACATTGTTCCTTTTGATAATAGCTTACTTAATATTGACATTGGTGATATTGATCGATATGCTCCCGAGTCTTTGGTTGGACTACCATTTAGGAGTGAGAAGCAAGGAACTTCAAGGACCTTGCTTTCCTCATTTAACAATGGTTCTCATTCATCAGATCTTGAGCTGAATGTTGTTGGCCCTGAAAAGGGCGAGTCCTTGGATCTTGATGAGTGTGACTTGGTAGATATTGCTGGAACTAGTAAACTTGAGGTTGAAAATGCTAAACTAAGAGCTGAACTTGCTTCAGCAATAGCACTAATTTGTTCCTTCAGCCCTGAAGTGGAATATGGATCACTTGATGATAGCAAGCTTGATAATTTGCTAAAATGTGCCGCTGAGAAAACAGCTGAAGCCTTGCAACAGAAGGATGAATTCGTAAAACATCTTGAATCGATGTTGAAGGCTAAACATTTGCAGTGTCAATCATATGAAAAGCGAATCGAAGAACTGGCTCAGCAATTGTCTGATCAATACATGCGGGCACAGAAGTGTTTTGGCAATAATGATGCTTCCTACTCCATGAAGCCTGATGATAGCAGGTCAGAAATTTCAGATCATGGGGAAGGACAGTTGCCTTGCAGGCCCAGTGAACTCATGGATGATATTTCTTGTACATCTGATCCAGTTGATGCTAAAGATGGGCTTTTGCCTAGGCTTTCTGTAAAAGCTCAGGAAGGAGTTGATGACAATATGACCGACTCTTCTGGGATGCTGAATCCTCATTTGGACTCCTCTATGGTGGACCCACAACGTGAGGATCAGCAGCTTGAAGACAAAGGTGAGGACAAGATGGAAGGTCAATTAAGCTCAATGCCGTCATATGATGCTGCTAGAGGTCATGTCATACCTTCTGAAGCTCCTACTGACCCAAGTCCAGGTAGTAAAGTTGATCCAAATCTTGTACTGGAACTGCAAAGTGCACTTGAAGATAAGGAAGGCCAGTTGACAGATACTGAAAGTCGGCTTAAATCTGCATTGGAGGAGGTTGCCAAGCTTGGGTTGGAGTTGGACAATAGCAGAAAACTTTTGGATGAATCACAGATGAATTGTGCTCATTTGGAGAACTGCCTGCATGAAGCTAGGCAAGAGGCCCAAACTCATCTTTGTGCTGCTGATAGGAGAGCTTCAGAGTACAACAATCTGCGAGCATCTGCTGTGAAGATGCGTGGCCTTTTTGAAAGACTCCGCACTTGTGTCAATGCTTCTGGGGGAGTTGCTGCTTTTGCTGAGTCACTGCGTTCTCTTGCTCAATCTTTATCCAGTGCTGCAAGTGACAGTGAAGATGAAGGTACTGCTGAGTTCCGTGCATGTATCAGGGTCCTTGCTGAAAAGGTTTGCTTATTGTCAAGGCAACGTGCTGAGCTCCTCGATAGGTATTCAAAGGCTGAAGCTGCAAACAAACACCTTACAAAGGAGTTGGAAGAGAGAAAAGAATTGGTTAAAACATTGTACACGAAGCATCAACTTGAGAAGCAGGCAAATAAAGAGAAGATCTCTTTCTGCCGCTTTGAAGTGCATGAGATAGCAGCCTTTGCGCTTAATTCATCAGGACACTATGAGGCAATAAGCCGGAACTGCCCCAATTACTACCTCTCTGCAGAATCTGTGGCCTTGTTCACCGAGAATCTCCCTAGCCGACCCTCCTACATTATTGGACAGATTGTCCATATTGAGAGACGGGTTGTGAAGCCGCTTCCTGGTGCAACAATCAGGCCCGATCATAATCGGGGAGGAGGAGATCAAGTAGATGGCTCATCATCATCATCATCATCATCGGACAGTATAAGCACACGGTTGACCTTGAATCCAGGAATCGGATCAGCATCGAACCCATTTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81111.p1 GENE.R_Transcript_81111~~R_Transcript_81111.p1 ORF type:3prime_partial len:1131 (+),score=308.18,ATG11|PF10377.5|5.1e+03,ATG11|PF10377.5|2.4e-14,APG17|PF04108.8|0.087,APG17|PF04108.8|1.6e-06,APG17|PF04108.8|1.1e+02,APG17|PF04108.8|2.8e+02,APG17|PF04108.8|1.4e+02 R_Transcript_81111:40-3429(+)
MSSVVSGGSVSSGKLLIHIAENGHSFEVDCDESTSVEEVQTFIESMAGIQLNDQLLLCGDLKLETHEPLGAYKLPSDEQEVFCFNKARLQTNAVPPDAEQVKIHDVPEPPSPFSNQDPHPLDNAMDPALKALPSYERQFRYHYHCGHAIYSRTVGKLDVCERLLREQKVQERALEIARRNLDYFFRILNQNYLDFLKCYSQQHRVHSDLLVNFVKDIEKLRSCKLIAALQTPSRKCLLDLVKEENLRRWLENCTSSHKQFENKVSQFKHVFGKLKHDVEDLFSSKAALPIRDLELMIREHYQHTNEQRSIMQSLSKDVSTVKKLVDDCLASQLSSSLRPHDAVSALGPMYDVHDKNHLPKMRACDNSISDLLEFCANKKDEMNIFVHSYMQKIAYIQHNIKDVRLQFNAFSEAIKRQDAVFEGLKVVHGIGPAYRACLAETVRRKASMKLYMGMAGQLAEKLAAKREDEVRRREEFLKAQSAYIPRDMLASMGLFDTPSQCDVNIVPFDNSLLNIDIGDIDRYAPESLVGLPFRSEKQGTSRTLLSSFNNGSHSSDLELNVVGPEKGESLDLDECDLVDIAGTSKLEVENAKLRAELASAIALICSFSPEVEYGSLDDSKLDNLLKCAAEKTAEALQQKDEFVKHLESMLKAKHLQCQSYEKRIEELAQQLSDQYMRAQKCFGNNDASYSMKPDDSRSEISDHGEGQLPCRPSELMDDISCTSDPVDAKDGLLPRLSVKAQEGVDDNMTDSSGMLNPHLDSSMVDPQREDQQLEDKGEDKMEGQLSSMPSYDAARGHVIPSEAPTDPSPGSKVDPNLVLELQSALEDKEGQLTDTESRLKSALEEVAKLGLELDNSRKLLDESQMNCAHLENCLHEARQEAQTHLCAADRRASEYNNLRASAVKMRGLFERLRTCVNASGGVAAFAESLRSLAQSLSSAASDSEDEGTAEFRACIRVLAEKVCLLSRQRAELLDRYSKAEAANKHLTKELEERKELVKTLYTKHQLEKQANKEKISFCRFEVHEIAAFALNSSGHYEAISRNCPNYYLSAESVALFTENLPSRPSYIIGQIVHIERRVVKPLPGATIRPDHNRGGGDQVDGSSSSSSSSDSISTRLTLNPGIGSASNPFG

Click here to download the sequence:
Link to NCBI Protein BLAST