Transcript Information: R_Transcript_81293.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3560747309114
Replicate 22.2026793688264
Replicate 33.3446647533032
Condition 2: 8 Hour
Replicate 13.515148710218
Replicate 23.8274147445956
Replicate 35.6125225476534
Condition 3: 24 Hour
Replicate 14.7887450659015
Replicate 23.9239417658082
Replicate 34.283544659583


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_81293.p1 GENE.R_Transcript_81293~~R_Transcript_81293.p1 ORF type:complete len:1630 (+),score=324.51,RPAP1_C|PF08620.6|7.7e-15,RPAP1_N|PF08621.6|8.3e-15 R_Transcript_81293:50-4939(+)
ATGGAGAAAAATGGCGGAAAGCCGAAGAAGTTGGAAAGGGAAAGAGTATTGGGAGGAACAAAGGCAGTAGAATTATCAGAAGATGAAGCCTCAAAGCTGGTTGGGGGTATTGTTGAGAAGGGCATTTCTGGTAATTTTCCGACTCCCCCTTCTTCAGCACCTCGACCATCTGTTCTTCCTTTTCCTGTTGCTCGCCATCGCTCTCACGCTCCTCATTGGACTCCAAGGGTTACTCAATTTACTAGTACTTCTGGTGGTGGGTATGATGATGAAGATGAAGATGGTGATGAAGATAATGATCCTACAAATTATAACCCTATTGCAGACTTTGCTAACCCTATTCAAAGGAAGAAAAAGAAAGAATTAGATTTTAGTAAGTGGAGACATTTGGTTCCTTCTAATAATAGCATCTCGAATATCAATGGCAATGACAAAAACCGTAGTGTGAAACCTGGTGCACGAAAACAAAAGATGAATGGAAAATCCGTGAGGATTACTGACAAGGGAAGCTTGAGTAATAAGCCATCAGCGGTGATAGCTATGGACAATGATTCACCATCTAACTTATATGGGGCATGTAGTAAACCTGTGACAGTTGATACAGTCTCTGAGCCTACAAGGTCAGTGTCTATGGAAGTAGATAGTTTGAATGAATTATCTTCATCAAGAAGCAATGATCTTGAGCAATCAAGGTCAGAACGTGATCAGTTAGGCAATGTTGGCAGTAATTTAGCAGGCCTAATTAGTGGTGACGAGGAAAATAGTCTCAACCGTGAGGCTCAGAATGATATATTGTCTTACAAGGAGGTGGATATGGCTATGAAAGAGTTTCCATCGCTTGACATTCTAGGTGCAAGGGGCAATAATGCTTCGGCAACATTTGGGTCTAGCAGTGTAGGTTATAATGAGGAAGGACCAACAAGTATAGAGAATCAGATAGATGCTGAAAATCGTGCCTTGTTACAAAGAATGTCCCCTGAAGATATTGCAGAAGCACAGGCAGAGATAAGAAATAGGATAGATCCCGAACTGCTTAAGATTTTGAAGAAACGAGGGCAACAGAAATTGGAGAAGCAGAGAAACTCCACCTGCACTTCAAGTGCTGGTGATGTGCTAGTTTCAGGTGATACAAAAGGTGGAAAACATATAACTAAAGGTGAGCTTCAATCTTCCATTCCAGAAACTAATCTCTCTCCAACAGATAGAACTCCAGCCCTGAAAAATATAGAGAAAAGGCCAGATGATGGTGATGCTCAGAATTCGACATCAAAAGGTGGCAGCTTGTGGGATGGTTGGAGTAAACGGGTTGAGTCTGTGAGGAATCTGAGGTTTTCATTGGAAGGAAATGCTATTGAAGGAAGTGCTTTGGGTCAAACATATAATGCTGACAATGTTGCTGAACGGGACTTCTTGAGAACAGAAGGGGACCCTGGTGCTGCAGGGTATACAATAAAGGAGGCTCTAGCTCTAACAAGGAGTATTGTTCCTGGACAACGGGCTCTTGCATTGCATCTCCTTGCATCTGTTCTTAGTAAAGCTTTGCACAACATTTACAAAAGCCAACATGATACTAAAAGGACCAATGATGATTCTGTTGACTGGGAGGCCATTTGGGCTTATGCTATTGGTCCAGAGCCTGAGTTTGTTCTATCTCTGAGGATGGCGCTTGATGATAATCATAATTCTGTGGTTTTAGCTTCTGCCAAAGTCATTCAATGCATGCTAGCCTGTGAAGTGAATGAAAACTTCTTCAACACAATAGAGAAAATGGCATCAAAAGATCTGTATACTGCACCTATATTTCGAAGTAGACCTGATATCAAACATGGTTTCCTCGGTGGTGGGTTTTGGAAATATAGTACCAAACCGTCCAATATCCGTCCCCCTGATGAGGAAATTCTGAATGACAAGAATGAAGAACCTATTATTCAGGATGATAATATTGTTGCTGGTCAGGATGTTGCAGCTGGCCTGGTTCGGATGGCCATCCTTCCTAGGCTTTGTTATATTTTAGAGACAGACCCAGCAGTGTCCTTGGAGGAAAGCACGTTGTCAATATTAATTGCCTTAGCTAGGCATTCACCAACATGTGCAAATTCAATATGGAAATGTGAAAGGCTTCTCCAGACTATTATTGACAGATATACTACGAAAGACACTAAAGACCTTCAAGTCTCTAAAATCAAAAGTGCGACTCTTTTAAGAGTGTTAGCTCAATCAAGCCAGACCATTTGTACAGAGTTTATCAAGAAAGGGTTCTTCCAAGTTGTGACATGGCAATTATATCGTGCGACTTCTTCCATTGATGAGTGGGTGAAATCCGGGAGAGAGACTTGTAAGCTAGTTTCAGAGCTGATGATAGAACAATTACGTTTTTGGAAGGTCTGCATCATGTATGGTCATTGTGTTTCTTACTTTTCAAACTTCTTCCCTGCACTGTGCCTATGGCTAAATCCTCCGACATTAGACAAACTGATAGAATTGAATGTTTTCCATGAATTTGCTTCCATCAGTAAGGAAGTGTACCTTGTCTTAGAAGCATTAGCTAGAAAGCTACCTGATCCATATTCACCAGGAAATACTAGCCATCAACTTCGAGGTGGTATTAGTGATAATGTAGAAACTTGGTGTTGGAGTGATGTTTGCCCAATGGTTGCTTCGGCTTTGAAGTGGGTAGAGTTGATGAGTGATTCGCCATCTCCAAAGTTACTATGCGATAGTACGTATGTATCCTCCTTTCTATATATACTGTCTGCTATTACACACATGCTCGATGCTGTGCTCATACAAGCAGCTTCAGGAAATGCATCTGAGTTAAAAAGGGGCAGTCATATTGGGGCAATGTTCCAGGACTTGGTTGCTAAAATTTCCCTTCAAATCATTAAAGCCGGCTTCCTGAACTTTTCTAATCAAAGGATGAATGAGCATTCAACAGAACAATGTGGGATGCACTTTTCCATTGAAAAGTTGTGTTGTCTCAGACATGACTCTGATACTGAAGTGTCCCTGGCTTCTGTGTGGTGTCTTCATGGAATATTCCGTTTAATAGTCTCTATTGATTGTTGCATTCAAATGATCAGGGACAAGGATGGACTTGTGCGTTTCTGTGGAAATGAATGCTACAGTGGAATATTCGAACAGGGCATACTTAAGGTTTCAATTGGCCAATGGAGAACTGTGATTTCTGAATTCATGAGGTTAGTCACATCAAAATGGAACTTAGTAAATAGTATTGAAGTGTTTGGCAGGGGAGGTCCAGCTCCTGGTGTTGGAGTTGGATGGGGTGCTTCGAGCGGTGGATTTTGGTCTTTAATTGTTGCTTTGGTTCAAGCAGATGCAAAATTGCTAACTGAGCTGCTTGAAACATTTTATCTTTCCCCTGCCATGGATCTTCCTGGGGTAATGGAGGAGACTTTTATCACACAAAGTATCACTTCTGCCTTAGCATTGAGTTTAATGGTGGGTCCAGGTAACAAGGCGACCTTACAGAGTGTATTTAATGTGTTGCTGCAAATCCCCATTCTCAAGTATTTTGATCAATGTATCTTCCAATTTTTTCATCATTATCATGGACAAGAGCTTGTCAAATGGGAATATAGGGAGGGTGACCTCATGAGGTTCAGTAAGATTCTGGGTTCTCACTTCAGAAATAGATGGTTGTCTCTCAAGAAGAAGAAGAAAGCAAAGGATGACAAAAACAATGGTAATAAAACAGATAAGAAGGGTGGCAGTTTGCTGGGTACCATTCATGAAGACGTGGAGACCTCAGCTATGACCGATGAAGATAGCAACTCTTTAACCGCCGAGTGGGCTCATCAGCGATTACCTCTTCCCAGCCACTGGTTGCTCAGCCCTATCACCACCATAATTGACAGTACACCTAGTGATGTACTGAACAGTTCAACTGGAGAACCTTTAGTGCAAGAGCCGACGGAATTTATTGAACTTGCTAAAGCTGGTCTCTTCCTCCTGTTGGGTATTGAAGCGATGTCCTCCAAACTTTCAAAAGAAGACAACTCTCCTCTCCAGACCATACCATTAATCTGGAAATTGCATTCATTATCGGTACCATTACTTGGTGGGATGGGTGTTCTTGAAGAAGAAAGGAGTAGGGATGTGTTTGAAGCGTTACAGTCTCTCTATGGTCGACAGCTAGATGAATTACAGTTCAATACCACCACAGTTGTTACTAACATGGCTAAGACTGGGCGAAGAAGTGATACACTCGGGGTTGGTTGTCTGAGGTTTCAATCTGAGATCCATGAGAATTACTCCACATTTATTGAAACTCTTGTAGAGCAATTTTCTGCTATATCTTATGGTGATTTGGTCTATGGACGACAAATCGCGATTTATCTTCATAGACAAGTTGATGCTTCTGTGAGACTTGCAACCTGGAACTCTCTATCTAATGCCCGTGTTCTTGAACTCTTGCCACCATTGAATGACTGTTTATCCCAAGCCAAAGGGTACCTGGAACCTATTGAGGACAATGACAGCATATTGGAAGCCTTTGTTAAATCCTGGATTTCTGGCTCCCTTGACAGAGCTGCAACTCGGGCCTCTATGACATATACTATTGCTGTACACCATCTGTCATTGTTTGTTTTTAACGATCTTGAAGACAAGCTGTTGTTGCGAAATAAACTTGTGAAATCGTTGTTAAGGGACTATTCACGCAAGCGCCAACATGAGGCCATGATGTGGGATTTCATCCAGTATAAGTACTGTTTCGAAATTCAGAAGACGGAGCAGAGCATCAAGAACGCATTGCAGATGGATTACATAGATCAACGATTCGGGCTGCTCAAAGAAGCTTGCGAAGGAAATTCACAGCTCTTGGCAGTGGTGGAAAAACTGCAATCTTCCATTGCTAAGAGGCCGATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_81293.p1 GENE.R_Transcript_81293~~R_Transcript_81293.p1 ORF type:complete len:1630 (+),score=324.51,RPAP1_C|PF08620.6|7.7e-15,RPAP1_N|PF08621.6|8.3e-15 R_Transcript_81293:50-4939(+)
MEKNGGKPKKLERERVLGGTKAVELSEDEASKLVGGIVEKGISGNFPTPPSSAPRPSVLPFPVARHRSHAPHWTPRVTQFTSTSGGGYDDEDEDGDEDNDPTNYNPIADFANPIQRKKKKELDFSKWRHLVPSNNSISNINGNDKNRSVKPGARKQKMNGKSVRITDKGSLSNKPSAVIAMDNDSPSNLYGACSKPVTVDTVSEPTRSVSMEVDSLNELSSSRSNDLEQSRSERDQLGNVGSNLAGLISGDEENSLNREAQNDILSYKEVDMAMKEFPSLDILGARGNNASATFGSSSVGYNEEGPTSIENQIDAENRALLQRMSPEDIAEAQAEIRNRIDPELLKILKKRGQQKLEKQRNSTCTSSAGDVLVSGDTKGGKHITKGELQSSIPETNLSPTDRTPALKNIEKRPDDGDAQNSTSKGGSLWDGWSKRVESVRNLRFSLEGNAIEGSALGQTYNADNVAERDFLRTEGDPGAAGYTIKEALALTRSIVPGQRALALHLLASVLSKALHNIYKSQHDTKRTNDDSVDWEAIWAYAIGPEPEFVLSLRMALDDNHNSVVLASAKVIQCMLACEVNENFFNTIEKMASKDLYTAPIFRSRPDIKHGFLGGGFWKYSTKPSNIRPPDEEILNDKNEEPIIQDDNIVAGQDVAAGLVRMAILPRLCYILETDPAVSLEESTLSILIALARHSPTCANSIWKCERLLQTIIDRYTTKDTKDLQVSKIKSATLLRVLAQSSQTICTEFIKKGFFQVVTWQLYRATSSIDEWVKSGRETCKLVSELMIEQLRFWKVCIMYGHCVSYFSNFFPALCLWLNPPTLDKLIELNVFHEFASISKEVYLVLEALARKLPDPYSPGNTSHQLRGGISDNVETWCWSDVCPMVASALKWVELMSDSPSPKLLCDSTYVSSFLYILSAITHMLDAVLIQAASGNASELKRGSHIGAMFQDLVAKISLQIIKAGFLNFSNQRMNEHSTEQCGMHFSIEKLCCLRHDSDTEVSLASVWCLHGIFRLIVSIDCCIQMIRDKDGLVRFCGNECYSGIFEQGILKVSIGQWRTVISEFMRLVTSKWNLVNSIEVFGRGGPAPGVGVGWGASSGGFWSLIVALVQADAKLLTELLETFYLSPAMDLPGVMEETFITQSITSALALSLMVGPGNKATLQSVFNVLLQIPILKYFDQCIFQFFHHYHGQELVKWEYREGDLMRFSKILGSHFRNRWLSLKKKKKAKDDKNNGNKTDKKGGSLLGTIHEDVETSAMTDEDSNSLTAEWAHQRLPLPSHWLLSPITTIIDSTPSDVLNSSTGEPLVQEPTEFIELAKAGLFLLLGIEAMSSKLSKEDNSPLQTIPLIWKLHSLSVPLLGGMGVLEEERSRDVFEALQSLYGRQLDELQFNTTTVVTNMAKTGRRSDTLGVGCLRFQSEIHENYSTFIETLVEQFSAISYGDLVYGRQIAIYLHRQVDASVRLATWNSLSNARVLELLPPLNDCLSQAKGYLEPIEDNDSILEAFVKSWISGSLDRAATRASMTYTIAVHHLSLFVFNDLEDKLLLRNKLVKSLLRDYSRKRQHEAMMWDFIQYKYCFEIQKTEQSIKNALQMDYIDQRFGLLKEACEGNSQLLAVVEKLQSSIAKRPI*

Click here to download the sequence:
Link to NCBI Protein BLAST