Transcript Information: R_Transcript_82070.p1


Annotated TAIR IDAT3G49240.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)emb1796
Annotation TypeOrtholog
Chromosome Positionchr3:18256086-18257975 | Forward length=629
E-Value4.3E-227
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.583071716112
Replicate 26.4751949375454
Replicate 38.568169024515
Condition 2: 8 Hour
Replicate 17.4018339840528
Replicate 27.920190209397
Replicate 310.031882510809
Condition 3: 24 Hour
Replicate 113.844784511363
Replicate 212.492368012831
Replicate 311.896218119901


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_82070.p1 GENE.R_Transcript_82070~~R_Transcript_82070.p1 ORF type:complete len:655 (+),score=146.97,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|13,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|3.6e-12,PPR_2|PF13041.2|2.9e-10,PPR_2|PF13041.2|0.00075,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|0.057,PPR|PF01535.16|43,PPR|PF01535.16|0.0022,PPR|PF01535.16|6.2e-05,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.068,PPR|PF01535.16|1.8e-09,PPR|PF01535.16|8e-07,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.24,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|41,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|6.5e-05,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|3.2e-09,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|3.1,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|2,PPR_3|PF13812.2|6.6e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|1.9e-06,PPR_3|PF13812.2|0.059,PPR_3|PF13812.2|71,PPR_3|PF13812.2|0.00037,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.54,TPR_7|PF13176.2|5.7e+03,TPR_7|PF13176.2|0.48,TPR_7|PF13176.2|4.4e+03,TPR_7|PF13176.2|8.1,TPR_7|PF13176.2|0.42,TPR_7|PF13176.2|9.7,TPR_7|PF13176.2|1.1e+04,TPR_2|PF07719.13|4.1e+03,TPR_2|PF07719.13|33,TPR_2|PF07719.13|1.7e+02,TPR_2|PF07719.13|1.1,TPR_2|PF07719.13|2.2,TPR_2|PF07719.13|56,TPR_2|PF07719.13|8.8e+03,TPR_11|PF13414.2|17,TPR_11|PF13414.2|18,TPR_11|PF13414.2|0.14,TPR_11|PF13414.2|0.13,TPR_19|PF14559.2|1.3e+04,TPR_19|PF14559.2|21,TPR_19|PF14559.2|2.1,TPR_19|PF14559.2|0.14,TPR_19|PF14559.2|34,TPR_19|PF14559.2|4.8,TPR_12|PF13424.2|9.6e+03,TPR_12|PF13424.2|1.6,TPR_12|PF13424.2|7.9,TPR_12|PF13424.2|0.094,TPR_12|PF13424.2|4.2,TPR_12|PF13424.2|3.4e+02,TPR_14|PF13428.2|2.8,TPR_14|PF13428.2|2.5e+03,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|26,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|14,TPR_14|PF13428.2|1.3e+04,TPR_16|PF13432.2|1.2e+04,TPR_16|PF13432.2|43,TPR_16|PF13432.2|5,TPR_16|PF13432.2|2.8e+02,TPR_16|PF13432.2|8.9,TPR_16|PF13432.2|8.7e+03,TPR_1|PF00515.24|1.8,TPR_1|PF00515.24|6.1e+02,TPR_1|PF00515.24|5.1,TPR_1|PF00515.24|34,TPR_1|PF00515.24|3.7e+02,TPR_1|PF00515.24|1.3e+04 R_Transcript_82070:98-2062(+)
ATGGCCCTCTCCAAACCCTCTTCTTCTTTCATCCACCACCTCAAAACCCTCTCTCAACCCTACTACCACCTTCTTCACCGTATCCACCCTCATTCCCATTCCCATTCACCCATTCCATTTCGTTTCCTCTCCTTCGCCACTCCGGAAGACATCGCCGCCGAACGCCGCCGTCGAAAACGCCAACTCCGTTTGCAACCCCCTCTCTCCTCGTCTCCCTCTCGCCACTCCCAACCCCAAACCCAACGCCCCATAAACCCAAACCCAAACCCCAACTCCCCCAAACTCCCGGACCACGTCTTCTCTCTCACCGGCAACCGGCTCACCCTCCACAACAAGATATTGAAGCTAATTCGCGAGAACGACCTCGACGAAGCCGCTCTCTACACTCGTCATTCCGTCTATTCCAACTGCCGCCCCACCATCTTCACTTGTAACGCCGTCATGTCCGCCCTCCTTCGCCAGTCTCGCTACTCTGATCTTCTCTCTCTTCATCGCTTCATTACTCAAGCTGGTATCCCCTCTAATGTCATCACTTATAATCTCCTTATTACTCTTTATTGTGAGTGTCGAAAACCCGATACTGCACTTGACCATTACAAGAGGTTACTTGAGGACGCCCCCTTTGATCCTACTATTGAGACTTATAGGATTTTGATTAAGGGTTTGGTTGATAATGGTAGGGTTGGGAAAGCAGTCGAGATCAAGGATGAGATGTTGTCGAGAGGGTTAGATGTCGATGAGGTTGTGTTTGGTTATTTGATGAATGGGTTTGCTAATAAGGATAAGGATGGGGATAGGGTTTTGCAGCTTTACGGCGAGTTGAGGGGAAAATTGGAAAATTTGGGTGGAAAGGTGAGGAATGGGATTGTTTACGGGCCATTGATGAAGGGGTATTTTTTGAAGGGGATGGAGCGGGAGGCAATGGAGGTGTTTGAAGAGGCGGTAGTGGTAGGGGAGAAGGAGGATTCGAAGGTTAAGATGAATGATGTGGCGTATAATTTGGTGCTGGATGCTTTTTGTAAGCATGGCAACTTTGACGAGGCGTTGAAGCTATTTGATAGGATGAAGGAGTTGCATAATCCGCCTTGGAAGTTGACTGTTAATTTGGGTAGTTATAATGTGATGGCGGATGGGTATTGTGCTCAAGGGAGGTTTCAGGAAGCGGTTGAGGTGTTCATGAGTATGGGTGAGAAGAATTGTAGTCCGGATATCTTGTCGTTTAATAATTTGATTGGGCAGTTGTGTGACAATGAGTTGCTTCCTGAAGCTGAGGAATTGTGTGGGAGAATGGGTGAGAAGGGGGTTAATCCGGATGAAGTTACTTATGTTTTGTTGATGGATGCTTGCTTTAAGGATAATAGGCCGGATGATGCTGCCGGGTATTTCAGGAAGATGATTGATGCAAGTTTGAGGCCCAATTTGGCTGTTTATAATAAGTTGGTTGAAGGGTTAGTTAGTGTAGGGAAGATTGATGAGGCAAAGTCATTCTTTGACTTGATGGTGAAGAAGCTCAAGTTCAACTCGGCTAGTTATGAATTTATGTTCAAGGCCTTGTGTGATGTTGGGAAGGTGGATGATGTGCTTCAGATTGTCAGTGATATGTTGGATGAGGGAAGTGTTGACCTTAATGAAGATATGCACCGAATGGTCAAGGATGGGCTGAGAAGTCAAGGCCGAGAGGAGGAGGAATTGGACAGACTTATTGAGCAGAAAGAGAAAGAGAAAGAAGAAGCTAAGAGAAGGGAGGCTGAAGAAGCTGAGAGAGCCAAAGCCAGTGCAAGAGCTGCCGTTGCATCTTTGATTCCGTCTAAGTTGTTTGGGAACAAGGAAGATGGCAGGGAATCTACGGCTTTACCTGGAAGTACTGATACAGTATCCTCTAATGAAGCTCCGGCCAGTGGAGAAGCCAGCTCAGCAGCAGAATCAGATCTCAAGAGTGCTGGTCCTCCACATGTGACAGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_82070.p1 GENE.R_Transcript_82070~~R_Transcript_82070.p1 ORF type:complete len:655 (+),score=146.97,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|13,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|3.6e-12,PPR_2|PF13041.2|2.9e-10,PPR_2|PF13041.2|0.00075,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|0.057,PPR|PF01535.16|43,PPR|PF01535.16|0.0022,PPR|PF01535.16|6.2e-05,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.068,PPR|PF01535.16|1.8e-09,PPR|PF01535.16|8e-07,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.24,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|41,PPR_1|PF12854.3|0.009,PPR_1|PF12854.3|6.5e-05,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|3.2e-09,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|0.0043,PPR_1|PF12854.3|3.1,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|2,PPR_3|PF13812.2|6.6e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|1.9e-06,PPR_3|PF13812.2|0.059,PPR_3|PF13812.2|71,PPR_3|PF13812.2|0.00037,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.54,TPR_7|PF13176.2|5.7e+03,TPR_7|PF13176.2|0.48,TPR_7|PF13176.2|4.4e+03,TPR_7|PF13176.2|8.1,TPR_7|PF13176.2|0.42,TPR_7|PF13176.2|9.7,TPR_7|PF13176.2|1.1e+04,TPR_2|PF07719.13|4.1e+03,TPR_2|PF07719.13|33,TPR_2|PF07719.13|1.7e+02,TPR_2|PF07719.13|1.1,TPR_2|PF07719.13|2.2,TPR_2|PF07719.13|56,TPR_2|PF07719.13|8.8e+03,TPR_11|PF13414.2|17,TPR_11|PF13414.2|18,TPR_11|PF13414.2|0.14,TPR_11|PF13414.2|0.13,TPR_19|PF14559.2|1.3e+04,TPR_19|PF14559.2|21,TPR_19|PF14559.2|2.1,TPR_19|PF14559.2|0.14,TPR_19|PF14559.2|34,TPR_19|PF14559.2|4.8,TPR_12|PF13424.2|9.6e+03,TPR_12|PF13424.2|1.6,TPR_12|PF13424.2|7.9,TPR_12|PF13424.2|0.094,TPR_12|PF13424.2|4.2,TPR_12|PF13424.2|3.4e+02,TPR_14|PF13428.2|2.8,TPR_14|PF13428.2|2.5e+03,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|26,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|14,TPR_14|PF13428.2|1.3e+04,TPR_16|PF13432.2|1.2e+04,TPR_16|PF13432.2|43,TPR_16|PF13432.2|5,TPR_16|PF13432.2|2.8e+02,TPR_16|PF13432.2|8.9,TPR_16|PF13432.2|8.7e+03,TPR_1|PF00515.24|1.8,TPR_1|PF00515.24|6.1e+02,TPR_1|PF00515.24|5.1,TPR_1|PF00515.24|34,TPR_1|PF00515.24|3.7e+02,TPR_1|PF00515.24|1.3e+04 R_Transcript_82070:98-2062(+)
MALSKPSSSFIHHLKTLSQPYYHLLHRIHPHSHSHSPIPFRFLSFATPEDIAAERRRRKRQLRLQPPLSSSPSRHSQPQTQRPINPNPNPNSPKLPDHVFSLTGNRLTLHNKILKLIRENDLDEAALYTRHSVYSNCRPTIFTCNAVMSALLRQSRYSDLLSLHRFITQAGIPSNVITYNLLITLYCECRKPDTALDHYKRLLEDAPFDPTIETYRILIKGLVDNGRVGKAVEIKDEMLSRGLDVDEVVFGYLMNGFANKDKDGDRVLQLYGELRGKLENLGGKVRNGIVYGPLMKGYFLKGMEREAMEVFEEAVVVGEKEDSKVKMNDVAYNLVLDAFCKHGNFDEALKLFDRMKELHNPPWKLTVNLGSYNVMADGYCAQGRFQEAVEVFMSMGEKNCSPDILSFNNLIGQLCDNELLPEAEELCGRMGEKGVNPDEVTYVLLMDACFKDNRPDDAAGYFRKMIDASLRPNLAVYNKLVEGLVSVGKIDEAKSFFDLMVKKLKFNSASYEFMFKALCDVGKVDDVLQIVSDMLDEGSVDLNEDMHRMVKDGLRSQGREEEELDRLIEQKEKEKEEAKRREAEEAERAKASARAAVASLIPSKLFGNKEDGRESTALPGSTDTVSSNEAPASGEASSAAESDLKSAGPPHVTA*

Click here to download the sequence:
Link to NCBI Protein BLAST