Transcript Information: R_Transcript_8272.p1


Annotated TAIR IDAT5G19390.1
Annotated Gene NameRho GTPase activation protein (RhoGAP) with PH domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6531906-6538206 | Forward length=870
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.683331806998
Replicate 211.8378213484
Replicate 318.176576004372
Condition 2: 8 Hour
Replicate 114.600620165759
Replicate 217.795318959459
Replicate 322.847444922413
Condition 3: 24 Hour
Replicate 121.359816005358
Replicate 218.089406073826
Replicate 321.862312918119


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_8272.p1 GENE.R_Transcript_8272~~R_Transcript_8272.p1 ORF type:complete len:862 (+),score=196.12,RhoGAP|PF00620.23|1.3e-31,Lzipper-MIP1|PF14389.2|1.4e+04,Lzipper-MIP1|PF14389.2|1.2e+04,Lzipper-MIP1|PF14389.2|2.1e-20,PH|PF00169.25|1.5e-13 R_Transcript_8272:308-2893(+)
ATGTCGGCTTCATTGGCGGCATTTGAACGTCCCAGACTCGGTCCTTCCAATACGGTTTTTAAGAGTGGACCTCTTTTCATCTCTTCCAAAGGATTGGGTTGGAAATCTTGGAAGAAGCGTTGGTTCATTCTTACACGGACTTCTTTAGTGTTCTTCAAAAATGATCCAAGTGCCCTTCCTCAAAGAGGCGGAGAAGTAAATTTGACGTTAGGTGGGATTGACTTAAATAATTCAGGAAGCGTTGTTGTCCGAGAGGATAAAAAGCTGTTAACAGTACTTTTTCCTGATGGACGTGATGGCCGAGCATTTACGCTTAAGGCTGAGACATCAGAGGATTTATACGAATGGAAGACAGCCCTGGAGCAGGCCCTTGCACAGGCACCTAGTGCTGCCCTTGTGATGGGTCATAACGGGATATTTAGGAATGACACAAATGATGCTATCGATGGATCTTTCAATCAATGGAGGGATAAGCGTCCTGTAAAATCATTGGTGGTTGGACGTCCAATTTTGCTGGCATTGGAAGATATAGACGGTGGACCGTCGTTTCTGGAGAAAGCTCTTAGATTTCTTGAGACTTATGGAACCAAAGTGGAAGGAATTTTGCGTCAGTCTGCTGATGTTGAAGAGGTGGAGCGGAGAGTCCAAGATTATGAACAAGGCAAAAATGAATTCGATCCAGATGAGGATGCTCATGTTGTTGGTGACTGTGTGAAGCATGTCCTCCGTGAGCTCCCTTCTTCTCCGGTTCCAGCATCTTGCTGTACTGCATTGCTGGATGCTTACAAAATTGACCGTAAGGAAGCTCGGATTAATGCTATGCGATCGGCAATATTGGAAACATTTCCGGAACCAAACCGGCGATTATTGCAAAGAATTTTGAAGATGATGCATACAATTGCTTCTCATTCTTCTGATAATCGGATGAGTCCATCTGCGGTTGCTGCTTGCATGGCACCTTTACTGTTGCGCCCTCTTTTAGCTGGTGAATGTGAGCTCGATGATGACTTTGAAATGAATGGTGATAATTCAGCCCAGCTTCTGGCTGCTGCAAATGCTGCCAATAATGCTCAAGCTATTATTACAACTCTTCTGGAGGAATACGAGAATATTTTTGACGATGATAATTTGCAGAGATGCTCAATTTCTGCTGACTCGCGGATTGAGAACAGTGGGAGTGATGATTCCACAGATGATGAAAACCTAGATATCAAAGCAAATGGATGTCATGAGGCTGGTAATGAAGCAGAACAAACAGATGATGATCAGGAACGAGTGTTGAGTGGTAAACTGAGTGAAAGTAGCGGTTATGCTGGCAGTGACCTTTACGACTATAAGGTGCAGACTTTTGGAGGTGATGATTCTGATGGGTCACCTCGGACCAATCATGTCACCTCTGTCAATTCAAAACCTCGAGCAGATCCTCCAACATTTAAGGAGTCAAATACTGAGTTGAGTGAACAAACTAAAACAGTTAAAATGAGTGAAAGCTCGACTAGTGCAATGGACAGTCCTCTGACTCCAGCCGGAGAATCTTATCGCTCTATGGGGGAGATATTATCATCAATGGATCCAGGACCTCCTCTACCTGTCTCAGGTCTTGACTCAAGTGCTGAAAAGCCAACCAATAAACTCACAAATTCCAATGTTAAGCGGTCAACGTTTTGGGGCAGAAGCACTCCGCGGAAGACACCATCAATGGAATCAGTTGATTCTTCGGGAGAGGAAGAACTTGCTATCCAGAGGCTTGAAATTACGAAAAATGACTTGCGGCACCGTATTGCAAAGGAGGCACGGGGAAATGCAATATTACAAGCTAGCTTGGAGAGAAGGAAACAGGCTTTGCATGAGCGTCGCTTAGCCCTTGAACAAGATGTTCAAAGACTGCAAGAGCAGTTGCAAGCTGAAAGAGATCTTAGAGCTGCATTGGAGGTTGGTCTAAGCATGTCCTCGGGCCAATTCTCTAGTTCACGTGGTATGGATTCCAAGACAAGGGCGGAGCTTGAGGAGATTGCTCTTGCTGAGGCAGACGTAGCCAGATTGAAGCAGAAGGTGGCTGAACTGCACCATCAACTCAATCAGCAACGACTGCATCAATTTGGTCCGCTATCAGATGCATGCGAACGGAGATTTCTCCAGCAAGACTTTGATAGTACTCTTGCCTTTGTTAATCATGAAAGGAAGCAAAGAAGCGAGGAGAGTTTACTGGGGCCTGAATGGAATCATATCAAAGGGCAAATCTTAGCTACTGGAAGCAGCAGTAGGCAGCCTCGCAAGCAATTTATGGAGTCTACTAGTTTGAGTGATTCGAAAAATACTGATGCATCGGCTAGCGTGTCCTTGGATGAGTTTGTTGCTGTAGATTCTGCCTCAATGCCATCCACTTCTCGGGTAGCAGAGGTGCTGGATTTTCCAAGACATCCATCCGCAGCATCATCCACATTAGTGGAGTTAACAACCCGGCTCGACTTTTTCAAGGAGCGGCGATCTCAACTGATGGAGCAGCTGCACCACCTTGATCTGAATTATGGGGTGGCAACTTCGCAGGATTATTTGTACAGACCATCGTCACCTTCGTGGAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_8272.p1 GENE.R_Transcript_8272~~R_Transcript_8272.p1 ORF type:complete len:862 (+),score=196.12,RhoGAP|PF00620.23|1.3e-31,Lzipper-MIP1|PF14389.2|1.4e+04,Lzipper-MIP1|PF14389.2|1.2e+04,Lzipper-MIP1|PF14389.2|2.1e-20,PH|PF00169.25|1.5e-13 R_Transcript_8272:308-2893(+)
MSASLAAFERPRLGPSNTVFKSGPLFISSKGLGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEQALAQAPSAALVMGHNGIFRNDTNDAIDGSFNQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLETYGTKVEGILRQSADVEEVERRVQDYEQGKNEFDPDEDAHVVGDCVKHVLRELPSSPVPASCCTALLDAYKIDRKEARINAMRSAILETFPEPNRRLLQRILKMMHTIASHSSDNRMSPSAVAACMAPLLLRPLLAGECELDDDFEMNGDNSAQLLAAANAANNAQAIITTLLEEYENIFDDDNLQRCSISADSRIENSGSDDSTDDENLDIKANGCHEAGNEAEQTDDDQERVLSGKLSESSGYAGSDLYDYKVQTFGGDDSDGSPRTNHVTSVNSKPRADPPTFKESNTELSEQTKTVKMSESSTSAMDSPLTPAGESYRSMGEILSSMDPGPPLPVSGLDSSAEKPTNKLTNSNVKRSTFWGRSTPRKTPSMESVDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVQRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRLHQFGPLSDACERRFLQQDFDSTLAFVNHERKQRSEESLLGPEWNHIKGQILATGSSSRQPRKQFMESTSLSDSKNTDASASVSLDEFVAVDSASMPSTSRVAEVLDFPRHPSAASSTLVELTTRLDFFKERRSQLMEQLHHLDLNYGVATSQDYLYRPSSPSWS*

Click here to download the sequence:
Link to NCBI Protein BLAST