Transcript Information: R_Transcript_82778.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2433806759989
Replicate 20.7624354899773
Replicate 31.2157207104103
Condition 2: 8 Hour
Replicate 10.95754779123305
Replicate 21.3741324036483
Replicate 32.028112918479
Condition 3: 24 Hour
Replicate 11.9238385945003
Replicate 20.92410302614151
Replicate 32.8123866357466


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_82778.p1 GENE.R_Transcript_82778~~R_Transcript_82778.p1 ORF type:complete len:358 (+),score=50.78,UBN2_3|PF14244.2|7.3e-34 R_Transcript_82778:3120-4193(+)
ATGACCGACGACGACAAGAAGTCCGAGTTCCTCGTCTCCGATCCCACTTCACCCTACTATGTGCACCCATCTGATGGTCCAGGTTTGATTCTTACCAAGGTTGTTTTGAATGGTGAAAATTATGATATTTGGGAATCAGCAATTGTTAATGGGTTGAGAGCTAAAAATAAACTCAGCTTTGTCAATGAAAAAATTACTAAACCAGAATTGAAATCAAAAGAATATTTATCCTGGGAAATTGTCAATTCCATGTTAGTAGCTTGGATCAAAAATACTTTAGATAATGCAGTGCTTGCCAGTGTGGGTCGTATTGATGATTCTAAAGTCTTATGGGACAATTTAAAGTCTCGTTTTTCAATTAAGAACGGTGCAAAACAGTATCAGTTGTGGGCTGATCTTGTGGAGACTAAGCAACGTGGCATGTCTGTTATGTCTTATTATACTAAACTCTTGGCTATTTTGGAGGAAATAGCTGTGCATGCACCGACGGACGAGCCAAAATCCAATTCTTGGTTTGAGGAACTCAAAACTTACCTGTTTCTCATGGGATTGGACTCTGCTAAATATGGGCATCCTCGGACTAACATTCTTGGTAAAGAACCTTTCCCCTTTTTTTCTAATGCCTATTCTCAGGTTGTGCAAGAAGAACGCCATCAGTCCATAGCTTCTGTCAATGAACCAAGTCCGGCAGTTGGTTTTGCTGCTCAAGCTAGCACCCGTGGCAGGGGGAGTGCAAGTTTTCAGTCCAGTCTTCAGTCTGCACCAACATCTCAAGTTGCATCCAATTCCTCTTTTGAGCAACAAACTGGTAATACTCGAAACCGACCTTATTGCTCGTATTGTAATCGCTTTGGACATGTTTATGATACTTGTTATGAGCGCACTGGCAATTATCCACCTGGATGGACTCCTCGTGGTCGAGGAAGAGGACGTGGCCGAGGCAACAATCAGGGTGTGCCACGTTCAGGACACCATCATCCCGCCTCAGTGGCAGCAGTACAAAGTGGTGAGCTAAACAAACTCGAAATAATTTTTCTACCAGTGACTATCATTCTAAAGATTGTTTTCAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_82778.p1 GENE.R_Transcript_82778~~R_Transcript_82778.p1 ORF type:complete len:358 (+),score=50.78,UBN2_3|PF14244.2|7.3e-34 R_Transcript_82778:3120-4193(+)
MTDDDKKSEFLVSDPTSPYYVHPSDGPGLILTKVVLNGENYDIWESAIVNGLRAKNKLSFVNEKITKPELKSKEYLSWEIVNSMLVAWIKNTLDNAVLASVGRIDDSKVLWDNLKSRFSIKNGAKQYQLWADLVETKQRGMSVMSYYTKLLAILEEIAVHAPTDEPKSNSWFEELKTYLFLMGLDSAKYGHPRTNILGKEPFPFFSNAYSQVVQEERHQSIASVNEPSPAVGFAAQASTRGRGSASFQSSLQSAPTSQVASNSSFEQQTGNTRNRPYCSYCNRFGHVYDTCYERTGNYPPGWTPRGRGRGRGRGNNQGVPRSGHHHPASVAAVQSGELNKLEIIFLPVTIILKIVFS*

Click here to download the sequence:
Link to NCBI Protein BLAST