Transcript Information: R_Transcript_82780.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6288983716103
Replicate 23.1721029405918
Replicate 33.7491243187947
Condition 2: 8 Hour
Replicate 12.4662022249024
Replicate 23.6597846178919
Replicate 33.4605588592824
Condition 3: 24 Hour
Replicate 15.3265416049889
Replicate 23.5304281317651
Replicate 35.1963615443713


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_82780.p1 GENE.R_Transcript_82780~~R_Transcript_82780.p1 ORF type:complete len:556 (+),score=78.44,UBN2_3|PF14244.2|7.9e-35,gag_pre-integrs|PF13976.2|4.9e+03,gag_pre-integrs|PF13976.2|5.4e-08 R_Transcript_82780:3120-4787(+)
ATGACCGACGACGACAAGAAGTCCGAGTTCCTCGTCTCCGATCCCACTTCACCCTACTATGTGCACCCATCTGATGGTCCAGGTTTGATTCTTACCAAGGTTGTTTTGAATGGTGAAAATTATGATATTTGGGAATCAGCAATTGTTAATGGGTTGAGAGCTAAAAATAAACTCAGCTTTGTCAATGAAAAAATTACTAAACCAGAATTGAAATCAAAAGAATATTTATCCTGGGAAATTGTCAATTCCATGTTAGTAGCTTGGATCAAAAATACTTTAGATAATGCAGTGCTTGCCAGTGTGGGTCGTATTGATGATTCTAAAGTCTTATGGGACAATTTAAAGTCTCGTTTTTCAATTAAGAACGGTGCAAAACAGTATCAGTTGTGGGCTGATCTTGTGGAGACTAAGCAACGTGGCATGTCTGTTATGTCTTATTATACCAAACTCTTGGCTATTTGGGAGGAAATAGCTGTACATGCACCAACGGACGAGCCAAAATTCAATTCTTGGTTTGAGGAACTCAAAACTTACCTGTTTCTCATGGGATTGGACTCTGCTAAATATGGGCATTCTCGGACTAACATTCTTGGCAAAGAACCTTTCCCCTCTTTATCTAATGCCTACTCTCAGGTTGTGCAAGAAGAACGCCATCAGTCCATAGCTTCTGTCAATGAACCAAGTCCGGCAGTTGGTTTTGCTGCTCAAGCTAGCACCCGTGGCAGGGGGAGTGCAAGTTTTCAGTCCAGTCTTCAGTCTGCACCAACATCTCAAGTTGCATCCAATTCCTCTTTTGAGCAACAAACTGGTAATACTCGAAACCGACCTTATTGCTCGTATTGTAATCGCTTTGGACATGTTTATGATACTTGTTATGAGCGCACTGGCAATTATCCACCTGGATGGACTCCTCGTGGTCGAGGAAGAGGACGTGGCCGAGGCAACAATCAGGGTGTGCCACGTTCAGGACACCATCATCCCGCCTCAGTGGCAGCAGTACAAAGTGGTGGAGTAACCACTGAACATACAGTAGCAGCAACTCAATCTATGACTCCCATTATACCTGGACTTTCAAATGACGAAATTCAGAAATTGGTTACTATGTTGCGTTCTCCTGCCCCTTCTACCAGTTCTGAAAAGCTTTCTAGTAAGCATGATGTCTTTAATTGGGGGTGGCTTATTGATAGTGGTGCGTCTCACCATATGACGGGAAATCTTGCTTTTCTTACCAATGCTTATGATATTGATCCACCTCCAGTTGGTCTTCCTGATGGTGCCGTGACAAATGCAACTAAAGCTGGCACTATTATCTTTCCATCAGGACTCATTTTGAATCATGTGTTATATGCGCCTAATCTTTCAGTTAATCTAATATCTGTTGGCCAACTTATTCTTGACTCTCGCTACATTGTGACATTTTCTGATTTTATTTGTGTGCTCCAGGACCACACCTCGATGAGGCCGATTGGTGTGGGTGAATTGCGAAATAGAGTTTATTATTACAGGCCATTGACACTTGCTTCTTCCGCAGCCGTGACAACATCTTCAAATTCTATTGAATTATGGCATCAGCGTTTGGGACATCCATCAAGCAAGCCACTTTCATTTATTCCTGTAGTTCAGTCTAGTTCTCAAAAACAAAATAAACTTTGTGATGTTTGTTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_82780.p1 GENE.R_Transcript_82780~~R_Transcript_82780.p1 ORF type:complete len:556 (+),score=78.44,UBN2_3|PF14244.2|7.9e-35,gag_pre-integrs|PF13976.2|4.9e+03,gag_pre-integrs|PF13976.2|5.4e-08 R_Transcript_82780:3120-4787(+)
MTDDDKKSEFLVSDPTSPYYVHPSDGPGLILTKVVLNGENYDIWESAIVNGLRAKNKLSFVNEKITKPELKSKEYLSWEIVNSMLVAWIKNTLDNAVLASVGRIDDSKVLWDNLKSRFSIKNGAKQYQLWADLVETKQRGMSVMSYYTKLLAIWEEIAVHAPTDEPKFNSWFEELKTYLFLMGLDSAKYGHSRTNILGKEPFPSLSNAYSQVVQEERHQSIASVNEPSPAVGFAAQASTRGRGSASFQSSLQSAPTSQVASNSSFEQQTGNTRNRPYCSYCNRFGHVYDTCYERTGNYPPGWTPRGRGRGRGRGNNQGVPRSGHHHPASVAAVQSGGVTTEHTVAATQSMTPIIPGLSNDEIQKLVTMLRSPAPSTSSEKLSSKHDVFNWGWLIDSGASHHMTGNLAFLTNAYDIDPPPVGLPDGAVTNATKAGTIIFPSGLILNHVLYAPNLSVNLISVGQLILDSRYIVTFSDFICVLQDHTSMRPIGVGELRNRVYYYRPLTLASSAAVTTSSNSIELWHQRLGHPSSKPLSFIPVVQSSSQKQNKLCDVCC*

Click here to download the sequence:
Link to NCBI Protein BLAST