Transcript Information: R_Transcript_82909.p1


Annotated TAIR IDAT5G03560.2
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:901452-902719 | Reverse length=363
E-Value6.2E-95
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.1903020191591
Replicate 29.0298774517646
Replicate 39.6913120599107
Condition 2: 8 Hour
Replicate 16.5923482550275
Replicate 26.4111619264938
Replicate 36.7275200201434
Condition 3: 24 Hour
Replicate 113.485704944945
Replicate 212.030141213042
Replicate 313.163234986526


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_82909.p1 GENE.R_Transcript_82909~~R_Transcript_82909.p1 ORF type:complete len:286 (+),score=64.62,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|0.009,PPR_2|PF13041.2|5.2e-15,PPR_2|PF13041.2|0.00095,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|2.4,PPR|PF01535.16|0.055,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|0.057,PPR|PF01535.16|3.3e-05,PPR_1|PF12854.3|6.8e+03,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|5.5,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|0.005,PPR_1|PF12854.3|0.087,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|81,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|79,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.46 R_Transcript_82909:147-1004(+)
ATGGCACTTGCATCACTTCGCAAAGCCCTTCTTCCCTCCATTATTCATCCACCTTTCAAATCCACCGTTTTCCTCACCATCCCCAAATTCTTAACAACAGCAGTTACAGCACCCTCCACTGCTACTACTTCTACTACATCCCAACAAAACCCAGAAAAGAAACTCAACCCAAAGGTCAACTTCACCCCACCGGAATCCGACTCCGAACCCGAACCCGACTCGACCCAGATGGAGAAACGGGACTTGCCACCCCCTTACGACCCGTTTAGGAACAAATCCATCACGGAGGACCCCCATGACCCGAAGAATCTGCAAGAAGTTTTCCACAAAATGAGGTCAGAGGGGCTGATCAACAATGCAGCCAAGATGTTCGACGAAATGTCCAAGGATGGTTTAACACATGAAGCATTAGAGCTGTTTAGGGAGATCAAAGACAAGGGTAAAATGCCTGATGTGGTGGCCCACACAGCTGTGATTGAGGCCTATGCTAATGCAGGGCAGTGCAAGGAAGCTCACAAGGTGTATTTAAGGATGTTGAGTTGTGGTGTTGCACCCAATGCTTACACTTATAGTGTGTTGATCAGGGGCCTTGCTGAAGGTGGGGATGAGAAGCTTGTTAAGAAGTATGTGTTGGAGATGTTGGGCCTCGGAATGAGGCCCAATGCTAGAGTGTGTGTCGCAGTTTTCGAGGCGTTTGCGAGGGAGGGGAAGGTGGAGGAAGGGAAGGAGTTGTTGAGGGAGATGAAGGAGAAGGGCTTTATGGTTGATGAAAAGGGTCTTAGGGAAATACTACCTAAGGGGAAATCTAAAAGAGGTTCTGTTCTTAGGACTGTCATGGATATTCTCTTTGCAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_82909.p1 GENE.R_Transcript_82909~~R_Transcript_82909.p1 ORF type:complete len:286 (+),score=64.62,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|0.009,PPR_2|PF13041.2|5.2e-15,PPR_2|PF13041.2|0.00095,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|2.4,PPR|PF01535.16|0.055,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|0.057,PPR|PF01535.16|3.3e-05,PPR_1|PF12854.3|6.8e+03,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|5.5,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|0.005,PPR_1|PF12854.3|0.087,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|81,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|79,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.46 R_Transcript_82909:147-1004(+)
MALASLRKALLPSIIHPPFKSTVFLTIPKFLTTAVTAPSTATTSTTSQQNPEKKLNPKVNFTPPESDSEPEPDSTQMEKRDLPPPYDPFRNKSITEDPHDPKNLQEVFHKMRSEGLINNAAKMFDEMSKDGLTHEALELFREIKDKGKMPDVVAHTAVIEAYANAGQCKEAHKVYLRMLSCGVAPNAYTYSVLIRGLAEGGDEKLVKKYVLEMLGLGMRPNARVCVAVFEAFAREGKVEEGKELLREMKEKGFMVDEKGLREILPKGKSKRGSVLRTVMDILFAK*

Click here to download the sequence:
Link to NCBI Protein BLAST