Transcript Information: R_Transcript_83212.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value7E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4720129802193
Replicate 20.22576667114299
Replicate 31.1083905288461
Condition 2: 8 Hour
Replicate 10.9215110464017
Replicate 20.7213187690705
Replicate 30.87830373969614
Condition 3: 24 Hour
Replicate 10.74057442670013
Replicate 20.94861328561623
Replicate 31.2944341481498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_83212.p1 GENE.R_Transcript_83212~~R_Transcript_83212.p1 ORF type:5prime_partial len:186 (+),score=22.36,Retrotrans_gag|PF03732.13|1.8e-05 R_Transcript_83212:1-558(+)
GGCCAATTCAATGCCCCTAGAAAGTATCAAGTTCACAATCACCTTGCTTCTATCAGCCAGGGCAACAAAAGCGTGAGTGAATTTTATACTGAACTTAAAACATCTTGGGACGAATATATGTCATTGATTAGTTTGCCTATCTGTACTTGTGGCACTGGAAACAAATTTTTGGAGCTCTTACAAGAGCAACAATTGCTTCAATTTCTACTGAAATTAAATGATGATTATAAGACTGCTCGTGGTAATATCTTGATGAGACAACCTCTTCCTTCATTGAGTCAAGCTTATAGACTGATTTTACAAGAGGAAAAACAAGGAGAATGTGGTGGCAACATTTCCATGAGTATTGATTCTGCAGCTATGGCAGCTCCTTTTCAAAGAACTTTTAATGCTAAACAGTCTTATCAGAATATTAAGCCTCTTGCGCCTAAGTGGAGTTCTACTGGAAATGGTACTCTGAAGTGCCACTTCCTAAATCGCTCGACAGCAAGAAATATGAGAATAGTCGTCTTTGTGTTCTTGGAAGTTACCTTTGCTTGTATTCTTCACCTGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_83212.p1 GENE.R_Transcript_83212~~R_Transcript_83212.p1 ORF type:5prime_partial len:186 (+),score=22.36,Retrotrans_gag|PF03732.13|1.8e-05 R_Transcript_83212:1-558(+)
GQFNAPRKYQVHNHLASISQGNKSVSEFYTELKTSWDEYMSLISLPICTCGTGNKFLELLQEQQLLQFLLKLNDDYKTARGNILMRQPLPSLSQAYRLILQEEKQGECGGNISMSIDSAAMAAPFQRTFNAKQSYQNIKPLAPKWSSTGNGTLKCHFLNRSTARNMRIVVFVFLEVTFACILHLT*

Click here to download the sequence:
Link to NCBI Protein BLAST