Transcript Information: R_Transcript_83337.p1


Annotated TAIR IDAT5G05130.1
Annotated Gene NameDNA/RNA helicase protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1512173-1514918 | Forward length=862
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3448993982555
Replicate 22.9557898644303
Replicate 32.7521444441979
Condition 2: 8 Hour
Replicate 12.7338587077021
Replicate 23.4463980507653
Replicate 34.0973295817864
Condition 3: 24 Hour
Replicate 13.510538483848
Replicate 23.2119309063948
Replicate 33.9578495125579


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_83337.p1 GENE.R_Transcript_83337~~R_Transcript_83337.p1 ORF type:complete len:824 (+),score=171.54,SNF2_N|PF00176.19|3.6e-78,Helicase_C|PF00271.27|3.4e+03,Helicase_C|PF00271.27|6e-18,HIRAN|PF08797.7|9.9e-17,HIRAN|PF08797.7|1.3e+03,zf-C3HC4_3|PF13920.2|7e-08,zf-RING_5|PF14634.2|6.5e-07,zf-C3HC4|PF00097.21|1.9e-06,zf-C3HC4_2|PF13923.2|3.3e+03,zf-C3HC4_2|PF13923.2|1e-05,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1e+04,zf-RING_2|PF13639.2|3.1e-06 R_Transcript_83337:274-2745(+)
ATGGTAGGTTTTATAATGGTCAACATAGTGGGAATTCGATACTACTCTGGCCAAATTAGTGGCAGAGAAATGGTGGTTCTTGTAAGAGTACCCTTAAACTTTTATGATGAGAACGCCATTAGAGTTCACAACACTCGAGGTGATCAAGTGGGCCACATTGAAAGAGGTGTTGCTAAAGTTTTGGCACCATTAATGGATACCCAACTCATATTTGCTGAAGGTATTGTCCCCAAAACTTCTAATAGGAATGTTAGGTTTAAGATTCCTTGTCAAGTTCATGTCTTTGCTAGAATTGAGGCTTTCCAGCTTGTTAAAGATCCCATTTTGGGAGGTGGGTTGCAGTTAATTTGTGATGAAAACCCTTCTTTTGCGCTTTCGGATTGGGTGGTGGTGAAGGAAGGGAGGAATAGGAAGGATGTTAGGAGTTTGGATGAGATTTTTAGGTTGGCTGGTGAGAATGTGGGTAAGATTGGGGAGGTAGTCAAGCCATTGGACCCACCTAATGATGTGATTAGTTCTGAGCTTTTTGTTCATCAGAAAGAAGGTCTTGGGTGGTTGGTTTGGAGGGAGAATTCGGACGAGTTGCCGCCTTTTTGGGAGGAGAAAGATGGGTTATTTGTTAATGTGTTGACCAATTATCAGACTAGTGTTAGGCCTGAGCCTCTTAGGGGTGGCATTTTTGCTGATGATATGGGGTTGGGTAAGACCTTGACTTTGTTGTCCCTTATTGCTTATGATAGACAATGTGGTGGAAATGGGGTTCGAAATGAGGATGTTGTCGATGATGATGATGATGGCATTCGAGTTGATGATGGTGGTGCTAATAAGGGGAAGAGAGGTCGAAAGGGTAAAAAGGTTAGTACTAGTGAGAAGAGAAGGAAAGTTGATCGTAGTGAATTGAAAAGAACGACTCTAGTTGTGTGTCCTCCTTCTGTATTTTCGACATGGGTGAATCAGCTGTGTCAGCACACTCGGCATAACACGATGAGCTTGTACTGGTTTCATGGTAAGGAGAGGACTCAAAAAGTGGAGGATCTTAAGAAGTATGATATAGTGCTTACCTCTTATAGTACATTGTCGAACGAGGGAGCTAAGGCAGGTTCACCAATCAAGAAGATGAACTGGAGGAGAATCATCTTGGATGAGGGGCATATGATTAAGAATGCTGACTCTCAGCAGAGTCGTGCTGTTAGAGCGTTAAATGGTGAGCGAAGATGGATAGTCTCAGGAACACCCATACAGAACAGCTCCTATGACCTGTTTTCGCTTATGGCCTTCCTGAAGTTTGATCCATTCTCCACTAAAAGCTACTGGAATAGTCTTGGACAACGTCCACTAGCTCAAGGGAATAAAATAGGGCTGGAACGACTTCAGGTCTTAATGGCCACTGTTTCGCTGAGGAGAACAAAGGACCAGAATCTGCTTGAGCTGCCGCCTAAATCTATACAGATATGTTATGTGGAACTTCTCCAAGAAGAACGTGAACTATATGATCGTTTGGAAGAAGAAGCCAAGAAGGTTGTAAAGACCTATATCAATGATGGGAGTGTCACATGCAATTATTACACTGTCCTTAGCATAATTTTGAGGCTTCGCCAAATCTGTACGGATGTTGCATTGTGCCCTCATGATATCAAATCTTTGCTCCCAGCTGACAGCATCGAAGACGTATCTAATAATCCTGAACTGCTGGAGAAGATGGTTTCAGTGCTGCAGGATGGTGAAGATTTCGACTGTCCAATTTGTATCTCTCCACCGACAGATATTGTGATTACTTGTTGTGCTCATATATTCTGCAGATCCTGCATAATTAAAACTCTGAAGCGCACAAAGGCCAACTGTCCTATGTGCCGCCATCCTTTATCAGAGTCCGATCTCTACTCAGCCCCACCTGCAGAGTCATCAGATAAAGACAGCATGGGAGCATCCTCATCTAGAACGTCTTCAAAAGTGTCCATTATCTTGAAACTCCTTTCAGAGTCTAAAGATGAGACAGGGACTGTGAAGTCTGTTGTATTCTCACAATTCCGCAAGATGTTGGTATTACTTGAAGAACCACTCAAAGCTGCTGGATTCAAGATATTACGGTTGGATGGAACAATGAGTGCCAAAAAGAGAGCCCGTGTGATTGAAGAATTCGGTGTTTCTGGACCAGATTCACCAACAGTTTTGCTCGCCAGTCTCAAGGCCTGTGGTACTGGTATAAATCTTACAGCTGCTTCGGTGGTCTACTTGTTGGAGCCTTGGTGGAATCCAGCAACTGAGGAGCAGGCTATGGACCGTGTTCATAGAATTGGTCAGAAAAAAGATGTGAAGATCATAAGGATTATTGCACAAAACACCATTGAGCAGAGAGTATTAGAGTTGCAGGAGAAGAAAAGGGAGCTTGCTAGGGGAGCTTTTGGAAAAAAAGGTCCAAAGGACAAGAGGGAAGTTAATGTCGAGGATCTCCGTACCCTCATGTCGCTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_83337.p1 GENE.R_Transcript_83337~~R_Transcript_83337.p1 ORF type:complete len:824 (+),score=171.54,SNF2_N|PF00176.19|3.6e-78,Helicase_C|PF00271.27|3.4e+03,Helicase_C|PF00271.27|6e-18,HIRAN|PF08797.7|9.9e-17,HIRAN|PF08797.7|1.3e+03,zf-C3HC4_3|PF13920.2|7e-08,zf-RING_5|PF14634.2|6.5e-07,zf-C3HC4|PF00097.21|1.9e-06,zf-C3HC4_2|PF13923.2|3.3e+03,zf-C3HC4_2|PF13923.2|1e-05,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1e+04,zf-RING_2|PF13639.2|3.1e-06 R_Transcript_83337:274-2745(+)
MVGFIMVNIVGIRYYSGQISGREMVVLVRVPLNFYDENAIRVHNTRGDQVGHIERGVAKVLAPLMDTQLIFAEGIVPKTSNRNVRFKIPCQVHVFARIEAFQLVKDPILGGGLQLICDENPSFALSDWVVVKEGRNRKDVRSLDEIFRLAGENVGKIGEVVKPLDPPNDVISSELFVHQKEGLGWLVWRENSDELPPFWEEKDGLFVNVLTNYQTSVRPEPLRGGIFADDMGLGKTLTLLSLIAYDRQCGGNGVRNEDVVDDDDDGIRVDDGGANKGKRGRKGKKVSTSEKRRKVDRSELKRTTLVVCPPSVFSTWVNQLCQHTRHNTMSLYWFHGKERTQKVEDLKKYDIVLTSYSTLSNEGAKAGSPIKKMNWRRIILDEGHMIKNADSQQSRAVRALNGERRWIVSGTPIQNSSYDLFSLMAFLKFDPFSTKSYWNSLGQRPLAQGNKIGLERLQVLMATVSLRRTKDQNLLELPPKSIQICYVELLQEERELYDRLEEEAKKVVKTYINDGSVTCNYYTVLSIILRLRQICTDVALCPHDIKSLLPADSIEDVSNNPELLEKMVSVLQDGEDFDCPICISPPTDIVITCCAHIFCRSCIIKTLKRTKANCPMCRHPLSESDLYSAPPAESSDKDSMGASSSRTSSKVSIILKLLSESKDETGTVKSVVFSQFRKMLVLLEEPLKAAGFKILRLDGTMSAKKRARVIEEFGVSGPDSPTVLLASLKACGTGINLTAASVVYLLEPWWNPATEEQAMDRVHRIGQKKDVKIIRIIAQNTIEQRVLELQEKKRELARGAFGKKGPKDKREVNVEDLRTLMSL*

Click here to download the sequence:
Link to NCBI Protein BLAST