Transcript Information: R_Transcript_83810.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.325518443468
Replicate 25.6187282804178
Replicate 310.243505896871
Condition 2: 8 Hour
Replicate 18.7080012664499
Replicate 210.235614927303
Replicate 317.171594084544
Condition 3: 24 Hour
Replicate 116.5447108425
Replicate 211.597131435421
Replicate 316.698366251741


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_83810.p1 GENE.R_Transcript_83810~~R_Transcript_83810.p1 ORF type:3prime_partial len:852 (+),score=175.88,UPF1_Zn_bind|PF09416.6|4.4e-72,UPF1_Zn_bind|PF09416.6|1.7e+03,AAA_11|PF13086.2|8.5e-25,AAA_11|PF13086.2|1.6e-29,AAA_12|PF13087.2|1.3e-29,AAA_30|PF13604.2|5e+02,AAA_30|PF13604.2|1.2e-12,AAA_19|PF13245.2|1.3e-13 R_Transcript_83810:221-2773(+)
ATGGATTCACAGGCGAGCAACCTCTACGAGACGGCATCCCAGCCCGACACCGGCAACGACGCCTACACTTTCCTCGAATTCAACACTCAAGTTGTCGGCCCTGATGACGTCGACGATTTCGCTTACCCCGAATTCAACGAACTCTCTCAACCTCCTCCTCAACCTTCTTCTTCGATCCGTTCTCCTTCTTCATCTTCTTCTGTCTGGCCCACACCTTCAGATGCCGTCATCAAGGACGTCACTCAACAACAACATCAACCTCAACCTTCTTCGGAGCCCTCCCCCTCGGCCTCGGCCTCCACATCGTCCTCCAAGGCTGCTGTCGTCGAGGCATTGGCAGCCGGCATGAGCGGGTTGAACTTCGAAGAGACGGCTGGTGATGAGGATGGATTTGTTGATCAGTTTGGGAAGGGGGATTTCACGGAGCATGCTTGTAGGTACTGTGGCGTCCAGAATCCGGCTTGTGTTGTTAGATGCAATGTCCCTTCTTGTCGCAAGTGGTTCTGTAATTCCAGAGGCAATACTTCCGGCTCTCACATTGTCAATCACCTGGTTCGAGCAAAACACAAAGAAGTTTGTCTTCATAAAGATAGTCCATTAGGGGGAACAATTCTTGAGTGCTATAACTGTGGTTGTCGCAATGTTTTCTTACTGGGGTTTATCTCTGCGAAGACAGAGAGTGTAGTTGTTCTTCTCTGTAGAGAGCCTTGTTTAAGCGTCAATGCACTCAAGGACATGAATTGGGATTTGAGTCAATGGTGTCCTCTTATTGATGATCGGTGCTTTCTTCCATGGCTTGTTAAGGTTCCCTCTGAACAAGAGCAACTAAGGGCCAGGCAAATCAGTGCACAGCAGATAAACAAGATTGAAGAACTTTGGAAAACAAATCCCGATGCATCTTTGGAGGATCTTGAGAAGCCTGGTGTAGATGATGAGCCTCAGCCTGTTGCTTTGAAATATGAAGATGCTTACCAGTATCAAAATGTGTTTGCCCCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAGTCTCAAAGTAAGGATAACGTCACCGTACGCTGGGATATTGGTCTTAATAAGAAGCGAATTGCATATTTTGTGTTCCCTAAGGAGGATAATGAGTTGCGTCTTGTACCTGGTGATGAGCTGCAGCTACGTTATTCTGGAGATGCTGCTCATCCTGCTTGGCAGTCTGTTGGGCATGTGATCAAATTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGAGCTAGTCAGGGAGTTCCTGTTGATATAAATCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATCGTATGCAAAGTGCCATGAAAACTTTTGCAGTGGATGAGACTAGTGTTAGTGGATACATTTATCACCACTTGTTGGGCCATGAAGTTGAGTTGCAGATGGTTCGGAATACTCTGCCACGTCGATTTGGTGCTCCAGGTCTTCCGGAGCTTAATGCATCACAGGTTTTTGCTGTAAAGAGCGTTCTTCAGAAGCCTATTAGTTTGATTCAAGGTCCTCCTGGCACTGGGAAAACCGTCACTTCTGCTGCAATTGTATATCACATGGCCAAACAAGGGCAAGGACAGGTGTTGGTATGTGCACCAAGTAATGTTGCTGTGGATCAACTAGCTGAAAAAATAAGTGCAACTGGCTTAAAGGTTGTTAGGCTCTGCGCAAAGTCAAGAGAGGCTGTTAGTTCCCCTGTTGAGCATCTTACACTTCATTACCAGGTTCGACACCTTGACACTTCAGACAAGAGTGAACTTCACAAATTACAGCAACTGAAGGATGAACAAGGAGAATTGTCCAGCAGTGATGAGAAGAAGTACAAGGCATTGAAGCGAGCAACGGAAAGGGAGATTGCTCAGAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGAGATCCCCGACTTGCAAATTTCAGATTCCGGCAGGTACTCATTGATGAGTCTACTCAAGCAACGGAACCTGAATGTTTAATACCGTTGGTGCTTGGGGCGAAGCAGGTCGTTCTAGTTGGTGACCACTGTCAACTTGGTCCTGTGATAATGTGCAAGAAAGCTGCTCGAGCTGGACTAGCGCAGTCCCTCTTTGAACGCCTTGTGTTGCTTGGTGTGAAACCCATTAGGTTGCAGGTTCAATATCGTATGCATCCTGCACTATCAGAATTCCCTTCCAATAGCTTCTATGAGGGTACACTTCAAAATGGTGTGACAATTAATGAAAGACAATCATCTGGCATTGATTTTCCATGGCCTGTTCCAAACCGTCCCATGTTCTTCTATGTCCAGATGGGACAAGAAGAGATAAGTGCAAGCGGAACATCATATCTGAACCGCACAGAAGCAGCAAATGTTGAGAAGATAGTAACTACTTTCTTGAGGAGCGGTGTGGTCCCTAGTCAGATTGGGGTGATAACACCATATGAGGGACAAAGAGCCTATATTGTGAATTATATGTCAAGAAATGGTGCTCTTAGACAGCAACTTTACAAGGAAATCGAGGTGGCGAGTGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_83810.p1 GENE.R_Transcript_83810~~R_Transcript_83810.p1 ORF type:3prime_partial len:852 (+),score=175.88,UPF1_Zn_bind|PF09416.6|4.4e-72,UPF1_Zn_bind|PF09416.6|1.7e+03,AAA_11|PF13086.2|8.5e-25,AAA_11|PF13086.2|1.6e-29,AAA_12|PF13087.2|1.3e-29,AAA_30|PF13604.2|5e+02,AAA_30|PF13604.2|1.2e-12,AAA_19|PF13245.2|1.3e-13 R_Transcript_83810:221-2773(+)
MDSQASNLYETASQPDTGNDAYTFLEFNTQVVGPDDVDDFAYPEFNELSQPPPQPSSSIRSPSSSSSVWPTPSDAVIKDVTQQQHQPQPSSEPSPSASASTSSSKAAVVEALAAGMSGLNFEETAGDEDGFVDQFGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGGTILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELQLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVELQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV

Click here to download the sequence:
Link to NCBI Protein BLAST