Transcript Information: R_Transcript_83835.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.1482710385104
Replicate 24.3069334187278
Replicate 36.225933808185
Condition 2: 8 Hour
Replicate 13.892624683921
Replicate 26.0775730132453
Replicate 35.1662276381101
Condition 3: 24 Hour
Replicate 14.4149629284046
Replicate 25.542090695581
Replicate 35.2754980527393


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_83835.p1 GENE.R_Transcript_83835~~R_Transcript_83835.p1 ORF type:complete len:390 (+),score=84.44,UBN2_3|PF14244.2|1.5e-40,Retrotrans_gag|PF03732.13|1.2e-05,Retrotrans_gag|PF03732.13|2.2e+03 R_Transcript_83835:176-1345(+)
ATGGCTACTGTTGTTCTTGATTCTGGTCATCCTATGTATCTAGATCCAAGTGACAGTCCTGGTATGGCTCTTGTTTCCAAAATTTTTGATGGTACAGCATTCAGTTCATGGAAGAAATCTATCACTATTGCTATTTCTGCTAAGAATAAATCTGGTTTCATTGATGGTTCTTGTGCTTGTCCTGATCTTGATGATCCACTATACAAAGTTTGGGTTAGATGTGATAACATGGTAACTTCTTGGCTTCTAAATGCTCTTTCTAAAAATATTGCTGAATCTGTGCTATACTGCAACTCTGCATTTGCAATTTGGAGGGACTTGTGTGAAAGATATGGTCAGACTAATGGTGCTCAACTTTTTCAAACTCAGAAAAATGTCTGTAATATGAGTCAGGGAGATAGTAACATCTCTGCATATTTCATGAATGCAAAAAGGCTTTGGGATGAACACAATGCAGTCCACATACTTCCTGCTTGTACATGTGGTCTAGCTCTTGAATGGCAAAAGTATATGGATAGATTGAAATTGATGCAGTTCTTGATGGGTCTTAATGAAGATTTTGTTCCAACTAGGGGAAATATTCTAATTCAAGTTCCTCTACCAAATTTGAATCAAGCATACTCCATGCTTTTACAAGATGAAGCACAAAAAGAGATTCATGCTAGTACCAAGTTTAACACTGATTCAGCTTCCTTTCATGTCACTTCTGATAGATATTCTCAAAGACCTCCTCCACATAGAAATTACTCATCTAACCAAAGGCCTTATTCAACTGATTCAAGGAGCATTTCTGATACAAAAAGATCTGATCTATTCTGCAATTACTGTAAAAAGCCTGGGCACATTATTAAGCAGTGTTACAAACTCAATGGTATCCCATCTAATTTCAGATCTAATAACTCTCGAGTAAAGAGAATGGCTGCACATGTTGAAGGTTTTCAAGACCCTGGAGAGTCCAATTTCGATGCTCAGTCTGGTATTTCTCAATCTCATACATCTCCAGGATCTCCTACTTTAACCAAGGAACAAACAATGCAACTTCTAGCACTTCTGAATAATCATAACATGTCTGATGTTTCTTCTGGAGGTTCTGCTAATACAGTCACTATCAATGCTCCCCAATTCTCAGTTTGTAGTTATGGAAGAGTTCTGCAAAGGAGAGGCAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_83835.p1 GENE.R_Transcript_83835~~R_Transcript_83835.p1 ORF type:complete len:390 (+),score=84.44,UBN2_3|PF14244.2|1.5e-40,Retrotrans_gag|PF03732.13|1.2e-05,Retrotrans_gag|PF03732.13|2.2e+03 R_Transcript_83835:176-1345(+)
MATVVLDSGHPMYLDPSDSPGMALVSKIFDGTAFSSWKKSITIAISAKNKSGFIDGSCACPDLDDPLYKVWVRCDNMVTSWLLNALSKNIAESVLYCNSAFAIWRDLCERYGQTNGAQLFQTQKNVCNMSQGDSNISAYFMNAKRLWDEHNAVHILPACTCGLALEWQKYMDRLKLMQFLMGLNEDFVPTRGNILIQVPLPNLNQAYSMLLQDEAQKEIHASTKFNTDSASFHVTSDRYSQRPPPHRNYSSNQRPYSTDSRSISDTKRSDLFCNYCKKPGHIIKQCYKLNGIPSNFRSNNSRVKRMAAHVEGFQDPGESNFDAQSGISQSHTSPGSPTLTKEQTMQLLALLNNHNMSDVSSGGSANTVTINAPQFSVCSYGRVLQRRGS*

Click here to download the sequence:
Link to NCBI Protein BLAST