Transcript Information: R_Transcript_83848.p1


Annotated TAIR IDAT3G48210.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17849435-17851396 | Forward length=315
E-Value3E-74
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.8188463039652
Replicate 27.3133181225308
Replicate 38.6650954951738
Condition 2: 8 Hour
Replicate 19.4458580133568
Replicate 27.7886217649073
Replicate 312.576958669557
Condition 3: 24 Hour
Replicate 113.757487477276
Replicate 211.729763155288
Replicate 313.280180371825


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_83848.p1 GENE.R_Transcript_83848~~R_Transcript_83848.p1 ORF type:5prime_partial len:267 (+),score=50.10,Spindle_Spc25|PF08234.8|1.7e-22 R_Transcript_83848:3-803(+)
GAGCAAAGTGCTCATAATCAAGTGGAATTGGGAAAACTCAAAGCTCAATTGAGAGAAGTAGAGGATGAATTGGTCAAGGCTCTTGCAGTCAAGACACGGAGGGAGGCTAAGCGGATGAGCCTTACGGATTCTCTTTCTGAAACAAGAGTCAAAGTAGAAGAGCTTCATAAAATTGTAGAGGATCAAAGAGCTCGAACTGATGAATATGCAGCCATCCTATCCCGACAGTCAAAAGCTCTAGCAGAATCCAAAGAGAAGAGTAAGGAAACTTTTAAACGCCAGGAAGAAATGCAAGAGGCATTTACATGGTACAACAGGGTACTTGGTTTCCGAATTGATGGTGGGCATGGTGTGAAATTTACATTTGTTAACATCAACAGAAAATGTCCATCTGAGGAGTATTCTTTCACTGTTCGTCATTCAAATGATGTATACACGTTGCTTGATTGTTCTCCTCACTTGAATGGTACTGAGGAGTTGGTCACCGAGTTAAACAAAAGCAACGGTTTATTTAAGTTTGTTAGGATGATGAGAGAGAAGTTCCTCGCTGCAGCATCAGGATCAGTGTCTAACTTTATATACCAAGATCAAGATACTGCTAGTATCTCTTTATCAGCCCCAGTTTCCTCAATTTCAGTGGATAGCAGAATGGAATCGCCGCTCCCGCTTAGAGAATCCAATCGAAATATTAAGAAAGATAACCATGCAAAAGGGATCAAATCACCTATTTTCTCTCCTGTGTCTGCATCATCTCTGCGACGATCCCCTCGTTTTCTGGAAAAAAACCAGATAGAACATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_83848.p1 GENE.R_Transcript_83848~~R_Transcript_83848.p1 ORF type:5prime_partial len:267 (+),score=50.10,Spindle_Spc25|PF08234.8|1.7e-22 R_Transcript_83848:3-803(+)
EQSAHNQVELGKLKAQLREVEDELVKALAVKTRREAKRMSLTDSLSETRVKVEELHKIVEDQRARTDEYAAILSRQSKALAESKEKSKETFKRQEEMQEAFTWYNRVLGFRIDGGHGVKFTFVNINRKCPSEEYSFTVRHSNDVYTLLDCSPHLNGTEELVTELNKSNGLFKFVRMMREKFLAAASGSVSNFIYQDQDTASISLSAPVSSISVDSRMESPLPLRESNRNIKKDNHAKGIKSPIFSPVSASSLRRSPRFLEKNQIEH*

Click here to download the sequence:
Link to NCBI Protein BLAST