Transcript Information: R_Transcript_84047.p1


Annotated TAIR IDAT3G55220.1
Annotated Gene NameCleavage and polyadenylation specificity factor (CPSF) A subunit protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20467116-20470944 | Reverse length=1214
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.92846596908
Replicate 222.680583082091
Replicate 328.223098813951
Condition 2: 8 Hour
Replicate 127.765902930833
Replicate 230.110564410755
Replicate 339.10230138317
Condition 3: 24 Hour
Replicate 137.959053539265
Replicate 229.424188847009
Replicate 339.616063623325


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84047.p1 GENE.R_Transcript_84047~~R_Transcript_84047.p1 ORF type:complete len:1284 (+),score=305.36,MMS1_N|PF10433.5|1.5e-167,MMS1_N|PF10433.5|8.7e+02,CPSF_A|PF03178.11|67,CPSF_A|PF03178.11|1.5e+03,CPSF_A|PF03178.11|5.9e-99 R_Transcript_84047:36-3887(+)
ATGCTTATCCAAAAAAAAAAAAAAAAATTCTCTTTTTTCATTATTTGTCACCGGCTCAGCGCTTACTCAAATCTGAGTATTACTCCGGTACTCCCTAATTCCCCACTCTCTTTCTTTCTTTCTTTCGTCCCTCCCTCCCTCCTTTCTCCAAGGAGAGACCTTAAACCCTACTCTGGAACTCTAGGGTTTCTCTCTCTATTCTGTGAAATCAAATCAAAAACCATGTATCTATACAGCTTAACTCTCCAAAAACCCACCGGCATAGTATGCGCTATCAATGGCAACTTCTCCGGTGGTAAGATCCAAGAAATCGTAGTGGCTCGTGGCAAAATCCTCGACCTTCTTCGTCCTGACGATAATGGTAAGATTCAAACCCTCCTTTCTGTCGATGTTTTCGGTGCTATTCGTTCTTTAGCCCAATTTCGCTTAACTGGTTCCCAAAAAGATTACATTGTTGTTGGTTCCGATTCCGGTCGTATTGTTATTTTAGAGTACAATAAAGAGAAGAATGTTTTTGATAAGGTTCATCAAGAAACCTTTGGTAAATCCGGTTGTCGTCGTATTGTTCCTGGTCAGTATTTGGCTATTGACCCTAAAGGTAGGGCTGTTATGATTGGTGCTTGTGAAAAACAGAAACTTGTTTATGTTTTGAATCGTGATACTGCTGCTAGGCTTACCATTTCGTCTCCCTTAGAGGCTCATAAGACTCATACTATTACGTACTCAATTAGCGGGGTTGATTGTGGGTTTGATAACCCTATTTTTGCTGCCATTGAGATGGATTATTCTGAGGCTGACCAGGATTCTACTGGCCAAGCTGCTGCCGAGGCTCAGAAACACCTTACCTTTTACGAGCTCGATTTGGGTCTTAACCATGTTTCGCGGAAGTGGTCTGAGCCTGTTGATAATGGGGCTAATATGCTTGTTACTGTGCCCGGTGGTGGGGATGGGCCCAGTGGGGTTTTGGTTTGTGCTGAGAATTTTGTCATTTATAAGAATCAAGGGCACCCCGATGTTAGGGCTTTGATTCCTAGGAGAGCGGATTTGCCTGCTGAACGTGGGGTTCTTATTGTTTCTGCTGCTACACACAAGCAGAAGTCAATGTTCTTCTTTCTGTTGCAGACTGAGTATGGTGACATATTTAAGGTCACTTTGGAGCATGGGAGTGAGGGTGTCACTGAGCTGAAGATTAAGTACTTTGATACCATCCCTGTGTCATCTTCCATGTGTGTGTTGAAGTCGGGGTTTTTGTTTGCTGCTTCTGAGTTTGGTAATCATGCCTTGTATCAGTTTCAAGCCATAGGTGATGAACCTGATGTGGAGTCTTCATCAGCTAGGATGATGGAATTGGAAACTGAAGAAGGTTTCCAGCCCGTGTTTTTCCAACCTAGGAGGCTTAAGAATCTTCTCAGGGTTGACCAAGTGCAGAGCCTGATGCCGATAATGGACATGAAGGTCATTAATCTTTTTGAGGAAGAAACTCCGCAGATATTCTCCCTGTGTGGCCAAGGTCCTCGCTCATCTTTAAGGATTCTAAGGCCTGGTTTGGGAATTACTGAGATGGCTACCTCTCCTCTTCCAGGTGTGCCTAATGCTGTATGGACTGTGAAGAAAAATGTCAATGATGAATTTGATGCCTATATTGTGGTCTCTTTTGCTAGTGTTACTCTTGTACTCTCCATTGGTGAGACTGTTGAAGAAGTTAGCGACAGTGGGTTCTTGGATACTACCCCTTCTCTAGCTGTATCTTTGATTGGCGACGACTCTCTCATGCAAGTCCATCCTAGTGGTATTAGGCACATTAGGGAAGATGGACGTATCAATGAGTGGCGAACTCCAGGAAAGAGAACAATTGTGAAGGTTGGTTACAACAGGCTTCAAGTTGTCATTGCACTGAGTGGAGGAGAGCTAATTTACTTTGAGGTGGATATGACTGGTCAGTTGATGGAAGTGGAGAAACATGAAATGCCTGGAGATGTGGCATGTTTAGACATTGCCCCAGTTCCAGAAGGGAGACAGAGATCCCGATTCCTTGCAGTTGGGTCATATGATAACACTATACGCATCTTATCTTTGGATCCTGATGACTGTATGCAGGTCTTGAGTTTGCAAAGTGTTTTCTCACCCCCTGAATCCCTCCTCTTTCTTGAGATACAGGCATCAACGGGGGGAGAAGATGGTGCTGATCACCCTGCCAGTCTTTTTCTGAATGCTGGTCTGCAGAACGGTGTTCTGTTTAGGACAGTAGTTGACATGGTAACAGGCCAACTTTCTGATTCCCGCTCTCGGTTTTTAGGTCTCAGAGCCCCTAAACTTTTCTCAATTATTGTGAGAGGTCGGCGTGCAATGCTTTGCTTGTCAAGTCGGCCATGGCTTGGCTACATATATCAAGGACATTTTCTGTTGACCCCTCTTACTTGTGGTACTCTTGAGTTTGCTGCTTCGTTTTCCTCTGATCAGTGTGCTGAAGGTGTTGTTGCTGTTGCTGCTGAGGCACTTAAAGTTTTCACTATTGAAAGGCTTGGTGAAACATTCAATGAAACTGTAATACCATTGAGGTATACCCCAAGGAAATTTGTCCTTCAGCCCAAGCGAAAACTGCTAGTGATGATTGAGAGTGACCAGCGGGCGTTGACGGCTGAAGAGCGAGAAGCTTCACAGAAGGAGTGCTTTGCATCTGGAGTGGATGAGAATGGTAATGTTGAAATGGAAAATGGTGATGATGATGAAGAGAATCAGCTCTCCGATGAGCAGTATGGTTATCCAAAAGCAGAGAAAGAGAAATGGGTTTCTTGCATCAGAGTTCTTGATCCGAGAACAGAGGAGACAGTTTGTTGCCTAGAACTTCAGGATAATGAGGCTGCATTCAGCCTATGTACTGTGAATTTTCATGACAAGGAGCATGGGATTCTATTAGCTGTCGGGACAGCAAAATCGCTGCAATTTTGGCCCCAAAAATCTTTTGATGCCGCCTATATTCACATTTACCGGTTTGTTGATAATGGAAAACTTGAGCTTTTGCACAAGACCCAAGTAGATGGTATCCCACTGGCTCTAAGCCAATTCCAGGGAAGATTACTCGCCGGAGTAGGACAGGTGCTCAGGCTATATGACTTGGGCAAGAAGAGGCTGCTCAGAAAGTGTGAGAATAAGCTGTTCCCAAACACAATAATGTCTATACACACCTACCGTGACCGTATATATGTCAGTGACATCCAAGAGTCATTCCACTACTGCAAGTATAGAAGAGATGAGAACCAGCTGTATATATTTGCTGATGATGTTTATCCCAGATGGCTTACTGCAGCACACCATGTAGATTTTGACACCATGGCAGGTTCCGACAAGTTTGGAAATGTCTATTTTGTTCGGCTGCCTCAGGATGTCTCTGATGAGATTGAAGAAGACCCAACTGGTGGGAAAATTAAATGGGAACAAGGGAAGCTAAATGGAGCCCCTAACAAGGTTGAGGAGATTGTCCAGTTCCATGTTGGCGATGTTGTAACAAGTTTGCAGAAGGCATCACTCATACCTGGTGGTGGAGAGTGCATCATTTATGGGACTGTGATGGGGAGCTTGGGGGCATTTCTTCCTTTCACCTCTCGTGATGATGTTGACTTCTTTTCTCACTTGGAAATGCATATGAGGCAGGAGCACCCACCTTTATGTGGCAGAGATCATATGGCATACAGATCTGCGTATTTCCCTGTTAAGGATGTGATTGATGGTGATCTTTGTGAACAGTTCCCAACCCTACCAATGGATCTGCAGCGGAAAATCGCTGATGAATTGGATAGAACACCAGCAGAGATTCTAAAGAAACTAGAAGAAATTAGAAATAAGATAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84047.p1 GENE.R_Transcript_84047~~R_Transcript_84047.p1 ORF type:complete len:1284 (+),score=305.36,MMS1_N|PF10433.5|1.5e-167,MMS1_N|PF10433.5|8.7e+02,CPSF_A|PF03178.11|67,CPSF_A|PF03178.11|1.5e+03,CPSF_A|PF03178.11|5.9e-99 R_Transcript_84047:36-3887(+)
MLIQKKKKKFSFFIICHRLSAYSNLSITPVLPNSPLSFFLSFVPPSLLSPRRDLKPYSGTLGFLSLFCEIKSKTMYLYSLTLQKPTGIVCAINGNFSGGKIQEIVVARGKILDLLRPDDNGKIQTLLSVDVFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKTHTITYSISGVDCGFDNPIFAAIEMDYSEADQDSTGQAAAEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRALIPRRADLPAERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLEHGSEGVTELKIKYFDTIPVSSSMCVLKSGFLFAASEFGNHALYQFQAIGDEPDVESSSARMMELETEEGFQPVFFQPRRLKNLLRVDQVQSLMPIMDMKVINLFEEETPQIFSLCGQGPRSSLRILRPGLGITEMATSPLPGVPNAVWTVKKNVNDEFDAYIVVSFASVTLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGYNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMPGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQVLSLQSVFSPPESLLFLEIQASTGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIYQGHFLLTPLTCGTLEFAASFSSDQCAEGVVAVAAEALKVFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVMIESDQRALTAEEREASQKECFASGVDENGNVEMENGDDDEENQLSDEQYGYPKAEKEKWVSCIRVLDPRTEETVCCLELQDNEAAFSLCTVNFHDKEHGILLAVGTAKSLQFWPQKSFDAAYIHIYRFVDNGKLELLHKTQVDGIPLALSQFQGRLLAGVGQVLRLYDLGKKRLLRKCENKLFPNTIMSIHTYRDRIYVSDIQESFHYCKYRRDENQLYIFADDVYPRWLTAAHHVDFDTMAGSDKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEEIRNKII*

Click here to download the sequence:
Link to NCBI Protein BLAST