Transcript Information: R_Transcript_84089.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value1.8E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6569622305445
Replicate 24.1992600832596
Replicate 38.3542219468321
Condition 2: 8 Hour
Replicate 15.4733109882077
Replicate 23.6829687738423
Replicate 35.9793540867157
Condition 3: 24 Hour
Replicate 17.8326636423932
Replicate 24.1515781441087
Replicate 35.6650529777852


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84089.p1 GENE.R_Transcript_84089~~R_Transcript_84089.p1 ORF type:5prime_partial len:85 (+),score=19.30,AAA_12|PF13087.2|2e-10 R_Transcript_84089:3-257(+)
GAGGTTTCCTCTGATAATGTGGCTACCCAAAATGGTGCAGAGGCTATAGTGCAAACTTCTCATTCATCAGATAATGAGGTGGGGAGTGTTGATTCATTCCAGGGCAGAGAAAAGGATTACATTATCTTGTCTTGTGTCAGGAGTAATGAGCATCTGGTTGGCTCTGTTGTCTTTTGTCTTGGTTATGTATGTGGTCTTTCTCTGCTGTTTAATATCTTTTCATCTTTGCTGAACTTGGTTTACCAAATGATCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84089.p1 GENE.R_Transcript_84089~~R_Transcript_84089.p1 ORF type:5prime_partial len:85 (+),score=19.30,AAA_12|PF13087.2|2e-10 R_Transcript_84089:3-257(+)
EVSSDNVATQNGAEAIVQTSHSSDNEVGSVDSFQGREKDYIILSCVRSNEHLVGSVVFCLGYVCGLSLLFNIFSSLLNLVYQMI*

Click here to download the sequence:
Link to NCBI Protein BLAST