Transcript Information: R_Transcript_84109.p1


Annotated TAIR IDAT1G56180.1
Annotated Gene Nameunknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21026243-21028047 | Reverse length=389
E-Value1.9E-177
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7643996213569
Replicate 22.5175420163427
Replicate 32.691678998109
Condition 2: 8 Hour
Replicate 12.701078627274
Replicate 24.1289877740319
Replicate 35.0058398593393
Condition 3: 24 Hour
Replicate 14.018992632188
Replicate 23.8081022544882
Replicate 34.9864075425785


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84109.p1 GENE.R_Transcript_84109~~R_Transcript_84109.p1 ORF type:5prime_partial len:417 (+),score=77.33 R_Transcript_84109:1-1251(+)
CACGTTTGTTTTATATACTTGTTTTTTTTCTTTTGTTTTTTACAATTTAGTCGTTTGTGTTGCCTAGCTCTCATATCAAACCTTCACTTTCCCCCTGCCATGGCACTCTCCTTCCTGCCTGCACACCTCTCAGGTACCCCTTTATATCTCTCCCCGAAGTCTCTCACTTGCCCATATGGGCAGATTAAATTGACCAATACAACCCGGCATACATATTTGGTTCGAGCTGTTAGAGAGTGGAAAGAATATGAAGAAGCAGTGAAAGACAAGGACCTTGCCAGAGCGCTCAGGTTCTTGAAGACAATTAATGGTGATGGGGTTCAAGTTCAACCCACTGAGTCAACTCGTTCTGATTTGGGGTTGCCTTTTTTGGGGAGAGATTGGGAGGTTCTTGATACTTGTTTGAATGCCAATGATATGAGGCTTGTGGGCAGTGCTTATGCCTTTCTTAAGGATAGAGGGTTGTTGCCTAATTTTGGCAAGTATAGAAATATTGTTTTGGAAGGACCACGAGATGTCACGCCTACAATCTTGAAGTCTTCAACTGGCTTGGAAGTGTCTAAACTTTCGCCAAAGAAGTGGGGTGTTTCTGGAACTTCCAGTGCTGTTTTGTTTGCCTTTCTTGGTGGTGTATCATTTCTGCTATCCCAAGGAATTGATTTGAGGCCCAATCTAGCTGCTATATTGGGGTTAGCCATAGCAGATTCTATTTTTCTTGGTGGCTCCTGTCTAGCCCAAATTTCCAGTTATTGGCCTCCATATAGGCGTCGCATCCTTGTTCATGAGGCAGGGCATCTTTTGGCAGCATACTTGATGGGTTGCCCAGTTCGTGGAGTAATTTTAGACCCATTTGTGGCCTTACAGATGGGCATTCAAGGGCAGGCAGGGACCCAATTTTGGGATGAGAACTTGGAGAATGAGCTAACCGGAGGACGGCTGAGCAGTACTGCTTTTGACAGGTACTGCATGATACTTTTTGCTGGTATTGCCGCTGAAGCTCTTGTATATGGTGAAGCAGAGGGCGGTGAAAATGATGAGAATCTGTTTAGGAGCATTTGTGTGCTTCTGCAACCTCCTCTTTCTGTTCCACAGATGTCAAATCAAGCGAGATGGGCAGTTTTGCAGTCATATAATTTGCTTAAATGGCATAAACATGTTCATAAAGCCGCCGTTAAAGCTCTTGAACGTGGTTGCAGCCTTAGCAGTGTAATTCAAAGTATCGAGGATGCATTGTCTTCTACAGAGGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84109.p1 GENE.R_Transcript_84109~~R_Transcript_84109.p1 ORF type:5prime_partial len:417 (+),score=77.33 R_Transcript_84109:1-1251(+)
HVCFIYLFFFFCFLQFSRLCCLALISNLHFPPAMALSFLPAHLSGTPLYLSPKSLTCPYGQIKLTNTTRHTYLVRAVREWKEYEEAVKDKDLARALRFLKTINGDGVQVQPTESTRSDLGLPFLGRDWEVLDTCLNANDMRLVGSAYAFLKDRGLLPNFGKYRNIVLEGPRDVTPTILKSSTGLEVSKLSPKKWGVSGTSSAVLFAFLGGVSFLLSQGIDLRPNLAAILGLAIADSIFLGGSCLAQISSYWPPYRRRILVHEAGHLLAAYLMGCPVRGVILDPFVALQMGIQGQAGTQFWDENLENELTGGRLSSTAFDRYCMILFAGIAAEALVYGEAEGGENDENLFRSICVLLQPPLSVPQMSNQARWAVLQSYNLLKWHKHVHKAAVKALERGCSLSSVIQSIEDALSSTEG*

Click here to download the sequence:
Link to NCBI Protein BLAST