Transcript Information: R_Transcript_84274.p2


Annotated TAIR IDAT1G23460.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8327382-8329622 | Forward length=460
E-Value2.1E-216
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4848798927973
Replicate 23.309761641978
Replicate 33.6109143008713
Condition 2: 8 Hour
Replicate 12.5933305239693
Replicate 23.3596398825427
Replicate 34.2920064521112
Condition 3: 24 Hour
Replicate 14.6367985041176
Replicate 23.6396609499228
Replicate 34.7441330355837


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84274.p2 GENE.R_Transcript_84274~~R_Transcript_84274.p2 ORF type:3prime_partial len:406 (+),score=61.29,Glyco_hydro_28|PF00295.13|1.6e-91,Pectate_lyase_3|PF12708.3|7.9e-09,Beta_helix|PF13229.2|1.3e-05 R_Transcript_84274:2182-3396(+)
ATGGAACTTGGAAGCTTGCTGATTACTGCTCATGGTATGGCTGAAAACAAGCTACACAAGACAGTTGCCCTGCTTGGAGAACTTGAAAGTTTCGACATTTACGAAGAAGATGAAATAGAAGATTATGAAATGCCATCATGGACTAGCGGACATGGTAAGAAAGTTCTTGTGAATGTTGATAGCTTTGGGGCCATTGGAGATGGAGTTTCTGATGATACTCAGGCCTTCTTAAAAGCATGGAACCAATCCTGCACTACGCCGAATTCAGTCTTCTTGGTTCCTGGAGAGCATCGTTATCTGGTTAATGCAACAAAGTTTCGAGGACCATGTGCTGATAGATTAATAGTTCAAATTGATGGGACGATAGTGGCACCGGAAGAGCCTAAGAACTGGGATCCAAACTTTTTGCGGGCATGGTTGAGCTTTTACAACTTAACTGGCGTACTTTTCCAAGGCAGAGGGGTTATCGATGGTTCAGGCAGCAAATGGTGGGCAGCATCCTGCAAAAAGAATAAAACCAATCCATGTAAAGGAGCACCCACCGCATTTACAATAGATTCGAGCTCTGCTATAAGGGTCAGAGGTTTGACGATCCAGAATAGCCAACAGATGCATTTTGTCATCTCTCGTTCTGATTCTGTGCGAGTGTCAAATATGCTAGTATCTGCCCCCGGGGACAGTCCTAACACAGATGGAATACATATAACTGAATCAACTAATGTTCTTCTTCTGAATTGTAAAATTGGAACAGGGGATGATTGCATTTCCATAGTCAATGCCAGCTCAAACATCAAAATGAAGACAATATATTGCGGTCCTGGGCATGGAATTAGCATAGGAAGCCTGGGTAAGAATAACTCCACTGGCATTGTCTCAAAAGTGGTTCTGACTGGAGCATTTATAAAGAATGCCACTAATGGCGTCAGAATTAAGACTTGGCAGGGAGGATCTGGTTATGTTAAAGCAGTACGGTTTGAAAATGTGATGATGCAAGACGTTGCAAACCCTATACTAATCGACCAGTTCTATTGTGATTCTCCAAATCCTTGTGCCAACAAGACAGAAGCTGTGCAAATAAGTCAGATAATGTACCGGAATATTACAGGAACTACAAAGAGCAAGGAAGCCATGAAGTTTGCTTGCAGCGACACGGTGCCTTGCAGGCACATTGTCCTGACCAATATTGACTTGCAAAAGAAGGATGGCACAGCTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84274.p2 GENE.R_Transcript_84274~~R_Transcript_84274.p2 ORF type:3prime_partial len:406 (+),score=61.29,Glyco_hydro_28|PF00295.13|1.6e-91,Pectate_lyase_3|PF12708.3|7.9e-09,Beta_helix|PF13229.2|1.3e-05 R_Transcript_84274:2182-3396(+)
MELGSLLITAHGMAENKLHKTVALLGELESFDIYEEDEIEDYEMPSWTSGHGKKVLVNVDSFGAIGDGVSDDTQAFLKAWNQSCTTPNSVFLVPGEHRYLVNATKFRGPCADRLIVQIDGTIVAPEEPKNWDPNFLRAWLSFYNLTGVLFQGRGVIDGSGSKWWAASCKKNKTNPCKGAPTAFTIDSSSAIRVRGLTIQNSQQMHFVISRSDSVRVSNMLVSAPGDSPNTDGIHITESTNVLLLNCKIGTGDDCISIVNASSNIKMKTIYCGPGHGISIGSLGKNNSTGIVSKVVLTGAFIKNATNGVRIKTWQGGSGYVKAVRFENVMMQDVANPILIDQFYCDSPNPCANKTEAVQISQIMYRNITGTTKSKEAMKFACSDTVPCRHIVLTNIDLQKKDGTAE

Click here to download the sequence:
Link to NCBI Protein BLAST