Transcript Information: R_Transcript_84480.p2


Annotated TAIR IDATCG00360.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)YCF3
Annotation TypeOrtholog
Chromosome PositionchrC:42584-43751 | Reverse length=126
E-Value1.5E-89
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.809651220623
Replicate 225.294755619635
Replicate 322.365633558448
Condition 2: 8 Hour
Replicate 121.401031568065
Replicate 218.135203383009
Replicate 313.14919824469
Condition 3: 24 Hour
Replicate 115.907771937307
Replicate 222.40258580224
Replicate 322.404737081076


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84480.p2 GENE.R_Transcript_84480~~R_Transcript_84480.p2 ORF type:complete len:127 (+),score=3.41,TPR_1|PF00515.24|0.16,TPR_1|PF00515.24|2.6e-09,TPR_1|PF00515.24|33,TPR_1|PF00515.24|1.2,TPR_12|PF13424.2|1.2e-07,TPR_12|PF13424.2|2.6e-07,TPR_12|PF13424.2|0.22,TPR_11|PF13414.2|3.7e-08,TPR_11|PF13414.2|2.6e-08,TPR_11|PF13414.2|0.47,TPR_2|PF07719.13|5,TPR_2|PF07719.13|0.00035,TPR_2|PF07719.13|0.021,TPR_7|PF13176.2|1.7,TPR_7|PF13176.2|0.00013,TPR_7|PF13176.2|67,TPR_7|PF13176.2|28,TPR_8|PF13181.2|23,TPR_8|PF13181.2|0.0024,TPR_8|PF13181.2|0.88,TPR_16|PF13432.2|3.3e-05,TPR_16|PF13432.2|2.6,TPR_17|PF13431.2|1.8e+03,TPR_17|PF13431.2|1.1,TPR_17|PF13431.2|0.014,TPR_17|PF13431.2|1e+03,TPR_14|PF13428.2|1.4e+02,TPR_14|PF13428.2|0.11,TPR_14|PF13428.2|8.7 R_Transcript_84480:864-1244(+)
ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTACGATCGAAGTTATATACTCTATAATATAGGCCTTATCCACACAAGTAATGGAGAACATACAAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAACCCATTCTTACCACAAGCTTTTAATAATATGGCGGTGATCTGTCATTACCGAGGAGAACAAGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCGATCAAGCTGCTGAGTATTGGAAACAGGCTATAACGCTTACTCCTGGGAATTACATTGAAGCGCATAATTGGTTGAAGATCACGGGGCGTTTCGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84480.p2 GENE.R_Transcript_84480~~R_Transcript_84480.p2 ORF type:complete len:127 (+),score=3.41,TPR_1|PF00515.24|0.16,TPR_1|PF00515.24|2.6e-09,TPR_1|PF00515.24|33,TPR_1|PF00515.24|1.2,TPR_12|PF13424.2|1.2e-07,TPR_12|PF13424.2|2.6e-07,TPR_12|PF13424.2|0.22,TPR_11|PF13414.2|3.7e-08,TPR_11|PF13414.2|2.6e-08,TPR_11|PF13414.2|0.47,TPR_2|PF07719.13|5,TPR_2|PF07719.13|0.00035,TPR_2|PF07719.13|0.021,TPR_7|PF13176.2|1.7,TPR_7|PF13176.2|0.00013,TPR_7|PF13176.2|67,TPR_7|PF13176.2|28,TPR_8|PF13181.2|23,TPR_8|PF13181.2|0.0024,TPR_8|PF13181.2|0.88,TPR_16|PF13432.2|3.3e-05,TPR_16|PF13432.2|2.6,TPR_17|PF13431.2|1.8e+03,TPR_17|PF13431.2|1.1,TPR_17|PF13431.2|0.014,TPR_17|PF13431.2|1e+03,TPR_14|PF13428.2|1.4e+02,TPR_14|PF13428.2|0.11,TPR_14|PF13428.2|8.7 R_Transcript_84480:864-1244(+)
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAITLTPGNYIEAHNWLKITGRFE*

Click here to download the sequence:
Link to NCBI Protein BLAST