Transcript Information: R_Transcript_84854.p1


Annotated TAIR IDAT5G23120.1
Annotated Gene Namephotosystem II stability/assembly factor, chloroplast (HCF136)
Annotated Gene Symbol(s)HCF136
Annotation TypeOrtholog
Chromosome Positionchr5:7778154-7780463 | Forward length=403
E-Value3.2E-233
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.982692179256
Replicate 212.639563932199
Replicate 316.752688689723
Condition 2: 8 Hour
Replicate 111.633831355532
Replicate 212.682291193508
Replicate 312.236533527674
Condition 3: 24 Hour
Replicate 113.363499729559
Replicate 28.6136210095041
Replicate 311.815004768798


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_84854.p1 GENE.R_Transcript_84854~~R_Transcript_84854.p1 ORF type:complete len:402 (+),score=77.34,PSII_BNR|PF14870.2|1.1e-124,Sortilin-Vps10|PF15902.1|0.02,Sortilin-Vps10|PF15902.1|0.002,Sortilin-Vps10|PF15902.1|22,BNR|PF02012.16|3,BNR|PF02012.16|1.8,BNR|PF02012.16|34,BNR|PF02012.16|3.4 R_Transcript_84854:168-1373(+)
ATGGCTACTACAGCACTGAAGCTTCCAGAATGCTCCTTCCACTCTATTTCCTCTTCTCATCATCCTCAACGACGACGTCGTCGTGTGTCGCCGAAGGCTTGTGCAGCTCCACAGCCGTCGCAACAGCCGCCGGTACTGGTCGCCGACCGTCGGAGATTCCTCGCGCATTCATTGTCACTGTCGTTGTCTCTCTCTCCTCTCGTAGGATTCTCTGAAGCTGCGAAATCGGAAGATTTGCTCTCCGAATGGGAGCGAGTTTACCTGCCTATTGATCCTGGCGTTGTTCTCCTTGATATCGCCTTCGTTCCTGATGATCCTAAACACGGTTTTGTTTTAGGGACAAGGCAAACTATTTTAGAGACCAAGGATGGTGGAGAAACATGGGTTCCACGCACTATAGCGTCAGCCGAAGAAGAGGATTTCAACTACAGATTTAACTCCATAAGCTTCAAAGGAAAGGAAGGTTGGATAGTTGGGAAGCCTGCAATTCTGTTGTACACCTCTGATGCTGGAGAAAACTGGAAGAGGATACCTTTGAGTGCTCAACTTCCAGGAGATATGGTGTATATAAAGGCAACTGAAGAAAAGAGTGCAGAGATGGTTACTGATGAAGGTGCAATATACAACACTTCAAATGGAGGTTATAATTGGAAGGCTGCTGTTCAGGAGTCTGTTTCAGCCACTCTTAACAGAACAGTCTCTAGTGGTATTAGTGGTGCAAGTTACTACACAGGTACCTTCAATTCTGTGAATCGTTCCCCAGATGGACGATATGTTGCTGTTTCAAGCCGTGGCAACTTTTATCTAACTTGGGAGCCTGGCCAGGCCTACTGGCAGCCACATAACCGAGCAATTGCAAGAAGAATCCAAAACATGGGATGGAGAGCTGATGGAGGCCTTTGGTTGCTTGTACGTGGCGGTGGACTATATTTAAGCAAAGGCACTGGGATAACGGAGGAGTTTGAAGAAGTGCCAGTGCAAAGTCGTGGCTTTGGCATTCTTGACATAGGATATCGCTCACAGGATGAAGCTTGGGCAGCTGGAGGCAGCGGTGTACTATTGAGAACAACCAATGGTGGCAAGACATGGATACGTGACAAAGCAGCTGATAATATAGCTGCAAATCTTTATTCTGTCAAGTTTATCGATGAGAAAAAGGGGTTTGTGCTTGGAAACGATGGAGTTTTGCTTCGGTACCTTGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_84854.p1 GENE.R_Transcript_84854~~R_Transcript_84854.p1 ORF type:complete len:402 (+),score=77.34,PSII_BNR|PF14870.2|1.1e-124,Sortilin-Vps10|PF15902.1|0.02,Sortilin-Vps10|PF15902.1|0.002,Sortilin-Vps10|PF15902.1|22,BNR|PF02012.16|3,BNR|PF02012.16|1.8,BNR|PF02012.16|34,BNR|PF02012.16|3.4 R_Transcript_84854:168-1373(+)
MATTALKLPECSFHSISSSHHPQRRRRRVSPKACAAPQPSQQPPVLVADRRRFLAHSLSLSLSLSPLVGFSEAAKSEDLLSEWERVYLPIDPGVVLLDIAFVPDDPKHGFVLGTRQTILETKDGGETWVPRTIASAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGENWKRIPLSAQLPGDMVYIKATEEKSAEMVTDEGAIYNTSNGGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNSVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDIGYRSQDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG*

Click here to download the sequence:
Link to NCBI Protein BLAST