Transcript Information: R_Transcript_85077.p1


Annotated TAIR IDAT3G18524.1
Annotated Gene NameMUTS Homolog 2
Annotated Gene Symbol(s)MSH2, ATMSH2
Annotation TypeOrtholog
Chromosome Positionchr3:6368151-6372409 | Reverse length=937
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.9148783299358
Replicate 23.2660911758686
Replicate 34.6298273871588
Condition 2: 8 Hour
Replicate 13.808912325127
Replicate 24.1882286623173
Replicate 36.2810335162609
Condition 3: 24 Hour
Replicate 17.4339566261137
Replicate 25.1578965236165
Replicate 35.813559657578


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85077.p1 GENE.R_Transcript_85077~~R_Transcript_85077.p1 ORF type:complete len:945 (+),score=201.50,MutS_V|PF00488.17|1e-94,MutS_III|PF05192.14|8.3e-30,MutS_II|PF05188.13|7.9e-17,MutS_II|PF05188.13|5e+03,MutS_II|PF05188.13|3.8e+02,MutS_II|PF05188.13|63,MutS_IV|PF05190.14|9e+03,MutS_IV|PF05190.14|7.6e-16,MutS_I|PF01624.16|6.8e-15 R_Transcript_85077:94-2928(+)
ATGGAAGACGCTTTGCATTTTCCTGACCATACCAAGCTCCCTGAACTCAAACTCGATGCAAAGCAGGCCCAAGGGTTTCTTTCATTCTTCAAAACCCTCCCTCAGGATTCTCGAGCTGTTCGATTCTTCGATCGCCGGGATTATTTCACTGCCCATGGAGAAAATGCAACTTTTATTGCAAAAACCTATTACCACACCACCACAGCCTTGCGTCAGTTGGGTAATGGTTCTAATGGCCTGGCCAGCGTAACTGTAAGTAAAAGCATGTTTGAGACAATTGCACGAGATCTCCTTCTAGAAAGAACAGACCACACAATTGAGTTGTATGAGGGTAGTGGTTCTAATTGGAGACTTGTGAAAAGCGGAAGTCCAGGAAATCTAGGCAGTTTTGAAGATGTTCTATTTGCCAACAATGAAATGCAGGATTCTCCAGTAACTGTTTCTTTGTTACCAAACTTTAGGGAAAGTGGATGCACTGTAGGAATGGGTTATGTTGACCTTACTAAGAGAGTGGTCGGACTGTCCGAGTTTCTTGATGATAGCCACTTCACTAATGTGGAGTCAGCTTTGGTTGGGCTTGGTTGCAAAGAATGCCTTCTCCCTGCAGACATTGCCAAGTCTACGGAGGGAAGAGGGTTGCTTGATGCATTATCAAGATGCAGTGTGATGGTCACTGAAAGAAAGAAGTCAGAGTTTAAGGCAAGGGATTTGGTGCAAGATCTTGGCAGGCTCGTCAAATGTTCCATTGAACCAGTCCGTGACATGGTTTCTGGATTTGAATTTGCACCTGCTGCTTTGGCCTCCTTACTATCCTATGCAGAACTGCTTTCAGATGATTGCAATTATGGAAACTATACTTTTAAGCAGTATAATCTTGACAGCTGCATGAGGTTAGATTCTGCTGCGATGAGGGCATTAAATGTAATGGAAAGCAAAACCGATGCAAATAAAAACTTTAGTTTATTTGGTTTGATGAATAGAACCTGTACTGCTGGAATGGGAAAGCGGTTACTTCACATGTGGCTGAAGCAGCCTCTACTGGATGTAAATGAAATAAACGCTCGGCTAGATTTGGTACAGACTTTTGTGGAGGATATAGAACTTCGCCAAGATCTGAGGCAACATTTGAAAAGAATATCTGACATAGAACGATTAATACGCAATCTTCAGAAGAAGAGAGCTGGTTTGCATCATGTTGTAAAACTCTACCAGTCAAGCATCAGACTTCCATATATTAAGGCTGCCCTTGAAAGGTATGATGGACAGTTCTCAGCATTGCTGAAGGAAAGGTTTTTGGAGCCCCTTGATATATGGACTGATGATGATCACTTGAACAAATTTATCGCCCTCGTTGAAACTTCTGTTGACCTTGATCAACTAGACAATGGGGAATACATGATATCATCTGGTTATCACCCACGGCTTCTTCAACTCAAAGAGGAGCAAGACTCACTTGAGCGCCAGATAGACATCCTGCATAGACAAACTGCAAATGATCTTGATCTCTCTGTCGAAAAAGTTTTAAAGTTAGAGAAGGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCAAAAATTCGGAAAAAGCTCACTACACAGTTTATTGTCCTGGAAACACGAAAAGATGGGGTCAAATTTACAAACACAAAGCTCAAAAAACTTGGGGACCACTATCAAAGAATACTTGAGGAGTACAAGAATTGCCAGAAAGAGATAGTATTGCAAGTGGTTCAGACAACTGCAAGTTTCTCTGAGGTATTCGAGTCTTTGGCTGCCTTGCTTTCTGAGTTAGATGTGTTGCTTGGCTTCGCTGACTTGGCTGCAAGTTGTCCTACCCCGTACACAAGACCAGACATCACTTCATCTGATATCGGAGATATCATTTTAGAAGGAAGTAGACACCCCTGTGTGGAGGCTCAAGATTGGGTGAATTTCATACCAAATGATTGTAAACTTGTTCGGGGAAAAAGCTGGTTCCAAATTATCACAGGGCCGAACATGGGAGGAAAATCCACTTTCATTAGACAGGTTGGTGTGAACATATTGATGGCTCAAGTGGGTTCCTTTGTTCCTTGTGACAAAGCCAGCATTTCAATTCGTGATTGCATATTTGCTCGAGTTGGTGCTGGTGACTGCCAATTACGAGGAGTTTCCACTTTTATGCAAGAAATGCTTGAGACTGCATCAATATTGAAGGGAGCAACTGATAAGTCATTGATAATTATTGATGAGCTGGGGAGAGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCAATTTGTGAGCACATTGTTGATGTCATTAAAGCACCTACTTTGTTTGCAACCCACTTTCATGAACTGACAGCACTAGCTCATGATAATGGAGGGGGTGAATCTTCGAATAGAAAGATTGTTGGAGTAGAAAATTACCATGTTAGTGCGCACATCGACTCATCAAGCCGCAAGCTAACCATGCTTTATAAGGTTGAGCCGGGGGCCTGTGATCAAAGTTTTGGTATTCATGTTGCAGAGTTCGCAAATTTCCCTGAAGCAGTTGTATCTCTTGCTAGAGAAAAGGCTGCTGAATTGGAGGATTTCTCCCCTGCCACAATCATAGCCGATGGTACATCAAAAGAGGTGGGGCTGAAACGGAAGAGGGAGTTTGATACTAACACCATATCTGAGGGTGCTTCAAAAGCTCATCGATTCTTGAAAGATTTTGCTGAGCTTCCATTAGACCAGATGGATTTGAAACAAGCATTGCAACATGTGGGTAAGATGAAGAGTGATTTAGAGAAGGATGCTGAAAACTGTCAATGGTTGAAGCAGTTCCTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85077.p1 GENE.R_Transcript_85077~~R_Transcript_85077.p1 ORF type:complete len:945 (+),score=201.50,MutS_V|PF00488.17|1e-94,MutS_III|PF05192.14|8.3e-30,MutS_II|PF05188.13|7.9e-17,MutS_II|PF05188.13|5e+03,MutS_II|PF05188.13|3.8e+02,MutS_II|PF05188.13|63,MutS_IV|PF05190.14|9e+03,MutS_IV|PF05190.14|7.6e-16,MutS_I|PF01624.16|6.8e-15 R_Transcript_85077:94-2928(+)
MEDALHFPDHTKLPELKLDAKQAQGFLSFFKTLPQDSRAVRFFDRRDYFTAHGENATFIAKTYYHTTTALRQLGNGSNGLASVTVSKSMFETIARDLLLERTDHTIELYEGSGSNWRLVKSGSPGNLGSFEDVLFANNEMQDSPVTVSLLPNFRESGCTVGMGYVDLTKRVVGLSEFLDDSHFTNVESALVGLGCKECLLPADIAKSTEGRGLLDALSRCSVMVTERKKSEFKARDLVQDLGRLVKCSIEPVRDMVSGFEFAPAALASLLSYAELLSDDCNYGNYTFKQYNLDSCMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDLVQTFVEDIELRQDLRQHLKRISDIERLIRNLQKKRAGLHHVVKLYQSSIRLPYIKAALERYDGQFSALLKERFLEPLDIWTDDDHLNKFIALVETSVDLDQLDNGEYMISSGYHPRLLQLKEEQDSLERQIDILHRQTANDLDLSVEKVLKLEKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDHYQRILEEYKNCQKEIVLQVVQTTASFSEVFESLAALLSELDVLLGFADLAASCPTPYTRPDITSSDIGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALAHDNGGGESSNRKIVGVENYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVSLAREKAAELEDFSPATIIADGTSKEVGLKRKREFDTNTISEGASKAHRFLKDFAELPLDQMDLKQALQHVGKMKSDLEKDAENCQWLKQFL*

Click here to download the sequence:
Link to NCBI Protein BLAST