Transcript Information: R_Transcript_85157.p1


Annotated TAIR IDAT5G01660.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:244504-248442 | Reverse length=656
E-Value4E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3947033322517
Replicate 20.91820555756405
Replicate 32.7381231528929
Condition 2: 8 Hour
Replicate 11.9274587567802
Replicate 22.2165305615169
Replicate 32.4343267887399
Condition 3: 24 Hour
Replicate 13.8820781901074
Replicate 22.0576334825028
Replicate 32.680127104518


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85157.p1 GENE.R_Transcript_85157~~R_Transcript_85157.p1 ORF type:internal len:343 (+),score=55.32,Dev_Cell_Death|PF10539.5|1.2e-53 R_Transcript_85157:3-1028(+)
GTGAGTGACTCCATTTCCGGGGAAAAAAAAACCCAGAGTGCCTCTGTTTCGCTTCGCGCTTTCCTTCTTTTCTTTCATGTTCTTCGGTTGCTCATCATCCCTTCTTATACTTCCACTCCTTCGATGGCTACTGGGAAGAGAACACAAAAGTCTAATGGAAGTACATTTGCCAGTTCAAGTACAACAGCTTCTGCTTCTATTAGTAGAAATTTGAAGACCAGTGATTTGGGTGGTGTCATTTTCGGTTGCACAGACAGCACCATGAAAGAATGCCTTACGAAACAGCTCTTTGGGTTACCACAGCAACACTTCACATATGTGAAGAACATCCGCCCAGGTTTGACATTGTTTCTGTTCAACTACAGTAGAAGGGCACTTCATGGCATCTATGAGGCCGCTAGCTGTGGTCAGTTGAATATTGATCCATATGGTTGGACAGTTAATGGGTCACAGAGAACATCATATCCTGCACAGGTTCAAATCCGTGTTCGAAAGGATTGTCGTCCTCTGGTAGAGAACCAGTTTAAACCAGTCATCAAACAAAATTATTATTCGCATAATCACTTCTCGTTTGAGCTGGACCATGCTCAAGTCAGCCAGTTAATCACTTTATTTTCAAACCAAGAGGTTGTAGTTGCACCCTCTTACTCTGTTCACAGAAATACAGGAAACTGGCAGATAGTAGTTCATCGTCAACCCGAACTCAAACATAGAGAGGAAGAAGGAAACTCTACTTCTCACAACCATTCAAATGGGCATTTGAGCCCCAAAGATCCGTCTTTGTGCCTTGACATAGTCAACCACTCGCTTGGATCTGTGATTGAAATAATGGAAAAGGATGAGACCAAGCGGATATATGAAAAATTGCAAAAGTTGGCAGTGATCTGTGAGCCATCAGATTCTTCTCTTTCAAATCAAGTACAGGAGTCAGCTGATGCCCCTAAATTGCATATTGAGGATGATGGTTCACAAAAAATAAAAATGATTCAAGATGAGAATGCTAATGAAAGCCCTTTTTCATCAGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85157.p1 GENE.R_Transcript_85157~~R_Transcript_85157.p1 ORF type:internal len:343 (+),score=55.32,Dev_Cell_Death|PF10539.5|1.2e-53 R_Transcript_85157:3-1028(+)
VSDSISGEKKTQSASVSLRAFLLFFHVLRLLIIPSYTSTPSMATGKRTQKSNGSTFASSSTTASASISRNLKTSDLGGVIFGCTDSTMKECLTKQLFGLPQQHFTYVKNIRPGLTLFLFNYSRRALHGIYEAASCGQLNIDPYGWTVNGSQRTSYPAQVQIRVRKDCRPLVENQFKPVIKQNYYSHNHFSFELDHAQVSQLITLFSNQEVVVAPSYSVHRNTGNWQIVVHRQPELKHREEEGNSTSHNHSNGHLSPKDPSLCLDIVNHSLGSVIEIMEKDETKRIYEKLQKLAVICEPSDSSLSNQVQESADAPKLHIEDDGSQKIKMIQDENANESPFSSD

Click here to download the sequence:
Link to NCBI Protein BLAST