Transcript Information: R_Transcript_8542.p1


Annotated TAIR IDAT3G19770.1
Annotated Gene NameVacuolar sorting protein 9 (VPS9) domain
Annotated Gene Symbol(s)ATVPS9A, VPS9A, VPS9
Annotation TypeOrtholog
Chromosome Positionchr3:6866916-6869114 | Forward length=520
E-Value5.3E-155
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.106154240216
Replicate 25.517958684016
Replicate 37.2444470794068
Condition 2: 8 Hour
Replicate 18.1255988355001
Replicate 29.3626854925231
Replicate 310.915222422059
Condition 3: 24 Hour
Replicate 110.737504494026
Replicate 27.4663682658525
Replicate 39.7982820535999


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_8542.p1 GENE.R_Transcript_8542~~R_Transcript_8542.p1 ORF type:complete len:449 (+),score=115.13,VPS9|PF02204.14|9.6e-32 R_Transcript_8542:79-1425(+)
ATGGAAGCTGCATTCAGCGCCCATTCGCTTTGGGCGGGTTGTTCCGAAGAGGAGCTTGACAGTGCTGGCGAGGGACTGGAGAAATATGTCATGACAAAGTTATTTAGCCGTGTTTTTGCTTCAGCTCCAGATGACGTGAAAGTCGATGAGGAACTTTCAGAAAAGATGGCTTTAGTTCAGCAATTTATTCGGCCTGAAAATTTGGATATTAAGCCTACCTTCCAAAATGAGTCGTCATGGCTGCTTGCACAAAAGGAGCTGCAAAAGATGAATATGTACAAGGCTCCCAGAGAAAAGCTTGCTTGTATTCTTAACTGCTGCAAGGTCATAACTAATCTGCTACACAATGCTGCTGTTGCTGCTAATGAAGACCCTCCTGGAGCTGATGAATTTCTTCCAGTTCTTATTTATGTGACAATAAAGGCCAACCCTCCCCAGCTGCACTCAAACTTGTTGTATATACAGCAATATCGACGTCAATCTCGAATGGTTTCTGAGACAGCCTACTACTTCACAAATATTCTTTCTGCTGAATCCTTCATCTCAAATATTGATGCTCAGTCCCTTTCGATGGACGAAGTGGAATTTGAAAGGAATATGGAATCTGCTCGGGCACTTCTATCTGGCCTAACATCTGATTTTGAGAATAATGCGACTGCTGAAAGTGCTTCCAGTTCAAAGCCATTGGAGTACAAGCAACAAGCTTTGACGCCTAATGAAAAGGATTCCACACGACAACCTCGAGTGTCCTCAGAGTCTTCTGCCATGAAATCCGGTGGCAAGGAGGATACACAAGTGAAAGATCAATCATCAATGACAAAAGTTATGTCCATATCTGATTTAGAGGAAAAAGGCGCAACTGTGATATTGAAGGATGATGGCATTAACAATATTTTTAAAGAGTTCCCTTACGTATTTTCCAGTTTTGGGGATCTAACTTTGCATGACGTTGAAGACTTGCTCAATAACTATCGACAGCTTGTATTCAAGTATGTCTGCCTTGCCAAAGGGCTTGGCATCACGCCATCTCCCCCGTCCATTCCACAAGCCCAAGCCCAGGGCCAGATGGAAACCAGGGAAAGATCTGAAGCTGATAGAGTCCGAGAAACAAATGAAAATAATGCTGACAACCATGATCAATCCTTTGCAAATTCGCATCCTGAAATGGGAATTCCTGAATCAAATTTGCCCCAAGATAATGCTGACACTATTCTTAAGGAGGAAGAAAGCTGTGAAGTGGCCCCACCTTCTGGAGATTCCGAAGCTGTGGTGCCTCAGGAGGGGGCTACTGGTCTTCCTAGTGGTGAGCAAAATGCCGAAACTTGGGCACCGTCGGGCAAACAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_8542.p1 GENE.R_Transcript_8542~~R_Transcript_8542.p1 ORF type:complete len:449 (+),score=115.13,VPS9|PF02204.14|9.6e-32 R_Transcript_8542:79-1425(+)
MEAAFSAHSLWAGCSEEELDSAGEGLEKYVMTKLFSRVFASAPDDVKVDEELSEKMALVQQFIRPENLDIKPTFQNESSWLLAQKELQKMNMYKAPREKLACILNCCKVITNLLHNAAVAANEDPPGADEFLPVLIYVTIKANPPQLHSNLLYIQQYRRQSRMVSETAYYFTNILSAESFISNIDAQSLSMDEVEFERNMESARALLSGLTSDFENNATAESASSSKPLEYKQQALTPNEKDSTRQPRVSSESSAMKSGGKEDTQVKDQSSMTKVMSISDLEEKGATVILKDDGINNIFKEFPYVFSSFGDLTLHDVEDLLNNYRQLVFKYVCLAKGLGITPSPPSIPQAQAQGQMETRERSEADRVRETNENNADNHDQSFANSHPEMGIPESNLPQDNADTILKEEESCEVAPPSGDSEAVVPQEGATGLPSGEQNAETWAPSGKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST