Transcript Information: R_Transcript_85426.p1


Annotated TAIR IDAT5G60870.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24485788-24487771 | Reverse length=445
E-Value8.4E-142
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5903541948941
Replicate 21.3858944169174
Replicate 32.0411944392611
Condition 2: 8 Hour
Replicate 11.2121715320418
Replicate 22.4353435668618
Replicate 31.8570954760132
Condition 3: 24 Hour
Replicate 12.0457451985083
Replicate 21.3830030327425
Replicate 32.8172293161353


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85426.p1 GENE.R_Transcript_85426~~R_Transcript_85426.p1 ORF type:3prime_partial len:303 (+),score=76.43,RCC1|PF00415.14|0.00015,RCC1|PF00415.14|1e-08,RCC1|PF00415.14|1.2e-11,RCC1|PF00415.14|1.5e-12,RCC1|PF00415.14|5.4e-06,RCC1_2|PF13540.2|0.00023,RCC1_2|PF13540.2|2.2e-07,RCC1_2|PF13540.2|5.6e-11,RCC1_2|PF13540.2|2.8,RCC1_2|PF13540.2|18 R_Transcript_85426:524-1429(+)
ATGTCAAGTCTATGGCTCTTGGTGGCCTTCATTCTGTTGCTCTTACTTCCCTTGGACAAGTCTTCACTTGTTTGCAGGGGTTATGGTGGTTTTGGTGCTCTTGGACATTCTGTTTTTACAAGAGAACTGGTTCCTAGATTGGTTGAAGGTTCCTGGAGTGAGAAATTTAAACATATTGCAACCAGTGGAACTCACACTGCAGCTATTGCTGAATCAGGTGAACTTTACACATGGGGTCGAGAAGAAGGTGATGGGAGACTAGGTCTTGGCCCTGGACGTGGCCCTGATCAGGCAGGTGGGCTTAGCATCCCAAGCAAAGTAAAAGCTTTACCTGTTCCTGCAGCTGCTGTAGCTTGTGGTGGCTTTTTCACGTTAGCCCTAACTGAAGAAGGACAGCTTTGGAATTGGGGAGCCAATTCAAATTATGAGCTTGGAAGGGGTGATAAGATAGGCGGTTGGCAACCAAGATTGGTTTCTACTGTTGAAAATTTGCATATAGTTCAGGTGGCTTGTGGTGGATATCATTCACTTGCTCTGACTGATGGTGGAAAGGTGCTTTCATGGGGACACGGTGGACATGGTCAATTGGGTCATTCTTCAAATCAAAATCAGAAGGTGCCTACAGTGGTTGAGGCTTTGACTCACGAGCACGTTATCTCGATTGCCTGTGGAGGTTCATCTTCAGCAGCCGTAACTGGTTATTGTTCAGACACAGGTGACACTGCATATTTGAAAACAGAGACAGGGAAGTTATACATGTGGGGAAACGCAAAGGACTCTCAACTAGGGGTTCCTGGGCTGCCTGAGATACAGTCTTCGCCTGTTGAAGTGAACTTTCTGATGGAAGATGATGGTTTGGGGCCACCCAGTGTTCGATCTGTTGCCATTGGTGCATCTCATGCCATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85426.p1 GENE.R_Transcript_85426~~R_Transcript_85426.p1 ORF type:3prime_partial len:303 (+),score=76.43,RCC1|PF00415.14|0.00015,RCC1|PF00415.14|1e-08,RCC1|PF00415.14|1.2e-11,RCC1|PF00415.14|1.5e-12,RCC1|PF00415.14|5.4e-06,RCC1_2|PF13540.2|0.00023,RCC1_2|PF13540.2|2.2e-07,RCC1_2|PF13540.2|5.6e-11,RCC1_2|PF13540.2|2.8,RCC1_2|PF13540.2|18 R_Transcript_85426:524-1429(+)
MSSLWLLVAFILLLLLPLDKSSLVCRGYGGFGALGHSVFTRELVPRLVEGSWSEKFKHIATSGTHTAAIAESGELYTWGREEGDGRLGLGPGRGPDQAGGLSIPSKVKALPVPAAAVACGGFFTLALTEEGQLWNWGANSNYELGRGDKIGGWQPRLVSTVENLHIVQVACGGYHSLALTDGGKVLSWGHGGHGQLGHSSNQNQKVPTVVEALTHEHVISIACGGSSSAAVTGYCSDTGDTAYLKTETGKLYMWGNAKDSQLGVPGLPEIQSSPVEVNFLMEDDGLGPPSVRSVAIGASHAM

Click here to download the sequence:
Link to NCBI Protein BLAST