Transcript Information: R_Transcript_85630.p2


Annotated TAIR IDAT1G77400.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29085881-29086579 | Forward length=232
E-Value1.8E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.7941576887009
Replicate 25.8323056711939
Replicate 37.1265405854696
Condition 2: 8 Hour
Replicate 15.7133684876906
Replicate 25.5902204602964
Replicate 34.336218092648
Condition 3: 24 Hour
Replicate 14.8466481925153
Replicate 25.0236978584093
Replicate 34.9855327342377


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85630.p2 GENE.R_Transcript_85630~~R_Transcript_85630.p2 ORF type:complete len:180 (+),score=29.97 R_Transcript_85630:1251-1790(+)
ATGGGAGAAGCAGATGGATCATTCAAGAAACCAGGAGCCATTCCATTCAAATGGGAAATCCGGCCTGGAGTTCCTAAAGCCGAGCAACATAATCATCGTCACCAACGTCAACCTTTAGAGGATCATCAATATTACTCTTTACCAAGCACCCCACAGAAGCTTACACCACCGCCGGCTGGGTCTTGCCTCACCCCACCACCCGACTTCCGAACCTCATCTGTCCGGTCTATGCCAAGCTTCCGTTTTGACCGACATAGGTATGAGCCCCCCCTCTTGAGCCGCCCTCAAGTGGCTTCGTCTGGTTGCTTCTTAGCACCTTGGTTCAGGCGTGAATGGGGAAAGAAAAGATCAGCTGCCAAGCCTAAATTAGAGGCTGAACCTGATTACACATCCGAGCTAGAGACTTTGGCCCGGTGGTCCATGTCAACCAGGAAGTCATCCCCCTTGACTCACTCGCCATCGTCTTCCTCTCTCTCGTCGTTCCGGTCATCCCCTCGGCCTGTTGGCGGTGCTGAATGGGCTGGGTATGGTCTGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85630.p2 GENE.R_Transcript_85630~~R_Transcript_85630.p2 ORF type:complete len:180 (+),score=29.97 R_Transcript_85630:1251-1790(+)
MGEADGSFKKPGAIPFKWEIRPGVPKAEQHNHRHQRQPLEDHQYYSLPSTPQKLTPPPAGSCLTPPPDFRTSSVRSMPSFRFDRHRYEPPLLSRPQVASSGCFLAPWFRREWGKKRSAAKPKLEAEPDYTSELETLARWSMSTRKSSPLTHSPSSSSLSSFRSSPRPVGGAEWAGYGLF*

Click here to download the sequence:
Link to NCBI Protein BLAST