Transcript Information: R_Transcript_85759.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0593236268364
Replicate 20.37493393600532
Replicate 30.51131110705697
Condition 2: 8 Hour
Replicate 10.6558713825155
Replicate 20.59895219217461
Replicate 30.48620385590322
Condition 3: 24 Hour
Replicate 10.30747063251389
Replicate 20.78768781752062
Replicate 31.5634074776355


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85759.p2 GENE.R_Transcript_85759~~R_Transcript_85759.p2 ORF type:complete len:224 (+),score=26.92,UBN2_3|PF14244.2|1.9e-39 R_Transcript_85759:177-848(+)
ATGACCACTAACACAGATAAACCGAATGAAGAAAAGAAGAGAAAGATTGCAGATCCTTCCTCTCCATATTTTCTACCAACCAATGATATTCCTGGCCTAAATATATGTGGCGTCATGCTTCATGGTGAAGCCAACTATAGAGAATGGGCTACGGCATTAAAGAACGCTTTCCGAGCTAAACGGAAATTAGGCTTTCTTGATGGAACAATTGTCATGCCGAATGATGGTGAAGACCTGGAAGATTGGTATAGCGTCAATTCGATGCTTTTTGGATGGGTCATGAATTCCATTGAATCAGGTTTGCATTCTAATCTTATATATCTTGATTCAGTCAAAGACTTATGGAACAACATAAAAGAACGATTTAGTACTCCTGATGCGATGCGCTTTCATGAATTAAAGGATGCCATTAATACCTGTAAACAACAAGGACAATCTATAACAGATTATTATGGGAGATTGAATAAATATTGGGAAGAATTTGCAGGTTACAGACTCATGCCTATCTGCAAGTGTAGTAAGTGCACATGTGAGATTCACAAACAATTTCTTGATGGTGTTGAAATTGAGAAAACTCATGAATTTTTGATGGGGTTGGATGACGTATATAACGAGCGACGTAGTCATATTCTTGGTTTGGAACCTCTCCCATCTCTTGGCAAGAGTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85759.p2 GENE.R_Transcript_85759~~R_Transcript_85759.p2 ORF type:complete len:224 (+),score=26.92,UBN2_3|PF14244.2|1.9e-39 R_Transcript_85759:177-848(+)
MTTNTDKPNEEKKRKIADPSSPYFLPTNDIPGLNICGVMLHGEANYREWATALKNAFRAKRKLGFLDGTIVMPNDGEDLEDWYSVNSMLFGWVMNSIESGLHSNLIYLDSVKDLWNNIKERFSTPDAMRFHELKDAINTCKQQGQSITDYYGRLNKYWEEFAGYRLMPICKCSKCTCEIHKQFLDGVEIEKTHEFLMGLDDVYNERRSHILGLEPLPSLGKSY*

Click here to download the sequence:
Link to NCBI Protein BLAST