Transcript Information: R_Transcript_85763.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.8798188428361
Replicate 24.7288964901572
Replicate 35.3655421396393
Condition 2: 8 Hour
Replicate 11.7647470232249
Replicate 20
Replicate 30.65411209442836
Condition 3: 24 Hour
Replicate 13.9297147506881
Replicate 24.7687046249897
Replicate 36.1127823900344


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85763.p4 GENE.R_Transcript_85763~~R_Transcript_85763.p4 ORF type:complete len:111 (+),score=19.02,UBN2_3|PF14244.2|1.2e-18 R_Transcript_85763:177-509(+)
ATGACCACTAACACAGATAAACCGAATGAAGAAAAGAAGAGAAAGATTGCAGATCCTTCCTCTCCATATTTTCTACCAACCAATGATATTCCTGGCCTAAATATATGTGGCGTCATGCTTCATGGTGAAGCCAACTATAGAGAATGGGCTACGGCATTAAAGAACGCTTTCCGAGCTAAACGGAAATTAGGCTTTCTTGATGGAACAATTGTCATGCCGAATGATGGTGAAGACCTGGAAGATTGGTATAGCGTCAATTCGATGCTTTTTGGATGGGTCATGAATTCCATTGAATCAGGATCGCACTTTGAGGATGGTGATTGGAGTGGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85763.p4 GENE.R_Transcript_85763~~R_Transcript_85763.p4 ORF type:complete len:111 (+),score=19.02,UBN2_3|PF14244.2|1.2e-18 R_Transcript_85763:177-509(+)
MTTNTDKPNEEKKRKIADPSSPYFLPTNDIPGLNICGVMLHGEANYREWATALKNAFRAKRKLGFLDGTIVMPNDGEDLEDWYSVNSMLFGWVMNSIESGSHFEDGDWSG*

Click here to download the sequence:
Link to NCBI Protein BLAST