Transcript Information: R_Transcript_85819.p1


Annotated TAIR IDAT1G65070.2
Annotated Gene NameDNA mismatch repair protein MutS, type 2
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:24173047-24176244 | Reverse length=876
E-Value4.7e-308
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4974943157542
Replicate 24.0014855119779
Replicate 34.4910252242183
Condition 2: 8 Hour
Replicate 16.5438675214982
Replicate 28.155721416336
Replicate 39.3839651838145
Condition 3: 24 Hour
Replicate 15.9846200659294
Replicate 24.1549885314122
Replicate 35.1063319806234


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85819.p1 GENE.R_Transcript_85819~~R_Transcript_85819.p1 ORF type:complete len:913 (+),score=182.29,MutS_V|PF00488.17|3.1e-34,Smr|PF01713.17|9.3e+03,Smr|PF01713.17|5.9e-09 R_Transcript_85819:33-2771(+)
ATGGAGCTCAAGCTATCACTCAAGTTTTCCTCCCTCACTCCCCTCCCCCTACGCTTCCCTTTCCACCACCGCAAAACTCGCCACCCCAACCACCGAAACCTCCGCCTTCAGTTTCCCTTCCATCTTTCTCTCTCCTCCAACCCAACAAACCCCACCAACATCTCCCAAGAGCTCCAATCAGAAACCCTAGAAACCCTAGAATGGAATCGCGTATGCAAGCAGCTCATCCCCTTCACTTCCACCTCAATGGGCCTATCTGCGGCCCAAACAGGCTCCATCCCCATGGGCCGAACTTTAGAGGAGAGCCAGAGGCTGCTGGCCCTGACAACTGCCGCATTTGGCCTTCCCAGCCCGCTGGACTTCTCCGGGATTGAGGATGTCTCGAAGATTGTAAGTTCGGCAGTTTCCGGTGAGCTTTTGTCGATCGGTGAGCTTTGTGTGGTTCAGAGGACGTTGAGGTCTGCCAGGAGGTTGTTTGAGCAGTTGAAGGAGTTTTCCTCCAATGGTGATCATTCCTCTGTGAGGAGCTATCCATTGCTTGAGATTCTTGAGAGTTGCAACTTCCTGGTTGAATTGGACCAGAAGATAAAATTCTGTGTAGATTGTAACCTTTCAGTAGTGTTGGATAGAGCTAGTGATGACTTGAAGACTATTAGGTCAGAAAGGAGAAAGAACATGGATATTTTGGGTTCTCTTTTAACGAGCATTTCAAATAAGGTATTTCAAGTTGGGGGCATCGATAAACCTTTGGTTACAAGTCGTAGGTCAAGGATGTGTGTTGGTATCAGAGCCTCTCGTAGATCCTTGCTTCCAGGTGGAGTGGTTTTAGATGTAAGTAGTTCTAGAGCTACGTACTTTATGGAACCCAAAGAGGCAGTGGACTTAAATAACATGGAAGTGTGGTTGGCAAATTCTGAGAAGGATGAGGAACGGGCCATCTTGAGCTTACTAACATCAGAACTAGGAAAGTCAGCAGCAGATATCAATTATTTGTTGGATAGAATACAGGAGATTGACCTCGCTGTTGCTAGAGCTCGTTATGCTAAGTGGTTAGACGGGGTTTGCCCAACTCTAAATTTAGGTAATGATGATGATATCTTTTTGGTGGACATTGAAGGTGTGCGGCATCCTCTGTTGCTTGAGTCATGCTTAGGTAGTTTAGAAGCTGTTCCTGGTTCTGGAAAATCAGAACAGTGTGATGAGGGAGCTGGTGTTAGAAGCGTCAGAGAGCTGCCTGATGAAGCGCCAAGTCTCCCTGTTCCTATAGACATCAGAATTAGATGTGGAACAAGTGTGGTAATTATCTCAGGACCTAATGCAGGTGGCAAAACTGCTTCAATGAAGACGCTGGGCCTGGCGTCCTTGATGTCAAAAGCTGGCCTGTATTTGCCTGCTAAAGGCCTACCTAAATTGCCTTGGTTTGATCTCGTTCTGGCTGATATAGGGGATCATCAGTCTCTGGAACAAAGCCTTTCTACCTTCAGTGGTCACATATTGCGCATTGGCAAGATCTTGGAGGTGGTTTCCAGAGATTCACTTGTCCTCTTTGATGAAATTGGGAGTGGCACTGATCCTTCGGAGGGGGTGGCCCTTTCTGCAAGCATCTTACAATATCTCAAAGATAGAGTAAATTTAGCTGTGGTAACTACACACTATGCTGATTTAAGCCGTCTGAGGGAGATGGATGCCAGATTTGAAAATGCAGCTATGGAATTCTCTCTGGAAACGCTGCAGCCTACCTACCAGGTTCTATGGGGGTCTGCTGGTGAATCAAATGCCTTGAAAATTGCTAGAAGAATTGGCTTTGACAATAAAATTATTGATCGTGCAGAAAATTGGCTGGAGAGGTTGGTGCCAGAAAAGCAGGCACAGCGAAAAGGTGCACTATATCAATCTTTATTAGAAGAGAGAAATAAGATGGCTGACCGGGCTAGTCAAGCAGCTTCCCTTCATTCTGATGTTATGTTACTATATAATGAGATTGAGAGGGAGGCGCATGATCTTGATTGGCGTGAGAAGGCATTGATTACGAAGGAGACCCAGCAAGTAGAACAAGAACTTGAGAATGTGAAATCCAAAATAGAAGCTGTGGTCCAAGATTTTGAGGATCAATTAAGAACCACAGATGTCAATCAATATGGTTTTCTCATTAGAAAGGCTGAATCGGCAATTGCATCCATTGTTAAAAGCCACAGTCCTGCAATGAATTTGGTTTCCGAAGAGATGGAAAGTTTGTATACACCTCAGCCTGGTGAACAGGTCCATGTAAAGCGTTTAGGAGGTAAGCTAGCTACTGTAGTTGAGGTGTCTGAAGATGATGGGACTGTTCTGGTTCAACAAGGAAAAGTAAGATTTCGGGTGGATAAAAGTGGTGTTCAAGCTGTACAACAACGCAATGCAGCTAGTTCATCCCCACGCATGAAAAAACAGGTTCGTATATCTGGAAATTCGGAAGAGGGCGTTGAAAGGAAAGATGAGGAAATGTCTTATGGACCAATGATACAGACATCAAAGAATACTATCGATCTACGTGGTATGAGGGTTGAGGAAGCTTGCCATGCGCTTGATATAGCCATAGCTGGAAGAGCTCCTCATTCTCTTCTTTTTATCGTACATGGAATGGGCACTGGGGTTGTCAAAGAACGCGTGGTTGAGATGCTGAAGAACCATCCACGTATTGAGAAGTTTGAACAGGAAAGTCCAATGAACTACGGCTGTACAGTAGCATTTATCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85819.p1 GENE.R_Transcript_85819~~R_Transcript_85819.p1 ORF type:complete len:913 (+),score=182.29,MutS_V|PF00488.17|3.1e-34,Smr|PF01713.17|9.3e+03,Smr|PF01713.17|5.9e-09 R_Transcript_85819:33-2771(+)
MELKLSLKFSSLTPLPLRFPFHHRKTRHPNHRNLRLQFPFHLSLSSNPTNPTNISQELQSETLETLEWNRVCKQLIPFTSTSMGLSAAQTGSIPMGRTLEESQRLLALTTAAFGLPSPLDFSGIEDVSKIVSSAVSGELLSIGELCVVQRTLRSARRLFEQLKEFSSNGDHSSVRSYPLLEILESCNFLVELDQKIKFCVDCNLSVVLDRASDDLKTIRSERRKNMDILGSLLTSISNKVFQVGGIDKPLVTSRRSRMCVGIRASRRSLLPGGVVLDVSSSRATYFMEPKEAVDLNNMEVWLANSEKDEERAILSLLTSELGKSAADINYLLDRIQEIDLAVARARYAKWLDGVCPTLNLGNDDDIFLVDIEGVRHPLLLESCLGSLEAVPGSGKSEQCDEGAGVRSVRELPDEAPSLPVPIDIRIRCGTSVVIISGPNAGGKTASMKTLGLASLMSKAGLYLPAKGLPKLPWFDLVLADIGDHQSLEQSLSTFSGHILRIGKILEVVSRDSLVLFDEIGSGTDPSEGVALSASILQYLKDRVNLAVVTTHYADLSRLREMDARFENAAMEFSLETLQPTYQVLWGSAGESNALKIARRIGFDNKIIDRAENWLERLVPEKQAQRKGALYQSLLEERNKMADRASQAASLHSDVMLLYNEIEREAHDLDWREKALITKETQQVEQELENVKSKIEAVVQDFEDQLRTTDVNQYGFLIRKAESAIASIVKSHSPAMNLVSEEMESLYTPQPGEQVHVKRLGGKLATVVEVSEDDGTVLVQQGKVRFRVDKSGVQAVQQRNAASSSPRMKKQVRISGNSEEGVERKDEEMSYGPMIQTSKNTIDLRGMRVEEACHALDIAIAGRAPHSLLFIVHGMGTGVVKERVVEMLKNHPRIEKFEQESPMNYGCTVAFIK*

Click here to download the sequence:
Link to NCBI Protein BLAST