Transcript Information: R_Transcript_85876.p1


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value5.9E-230
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6121841881273
Replicate 24.7956410906918
Replicate 34.2593787331059
Condition 2: 8 Hour
Replicate 14.0152516458147
Replicate 24.4525328409974
Replicate 37.0427186155235
Condition 3: 24 Hour
Replicate 16.722637548376
Replicate 25.4250124357496
Replicate 36.8579338257629


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_85876.p1 GENE.R_Transcript_85876~~R_Transcript_85876.p1 ORF type:complete len:683 (+),score=149.33,Lactamase_B_6|PF16661.1|9e+02,Lactamase_B_6|PF16661.1|6.3e-09 R_Transcript_85876:206-2254(+)
ATGAAGCTTACTTGTCTAAGCAAGGGTAATGGTTATCATTTTCCCCCATGTTACATACTTGAAATTGGCGGATTTCGATTGTTGCTGGATTGCCCCTTGGATCTTTCAGCTTTGGCTGTTTTCTCCCCTGTTCCTGCTTATTCTGACCGAAAACTTGAGGAGTCATTTGCTTGTGAATGCATCATCTCTTTGGATGCTGATTCTGCAGCTCATAAGAGGCAGAAAAGTGAAAACTCTATTGATGCTAGTGATTTAATATATGACATCCCTTGGTACAAAACTGTTTGTAATTTACACCTTTGGGATATTTCTTTCATTGACGCTGTCTTGATCTCAAGCCCTATGGGAATGCTGGGATTACCCTTTTTTACTCGTGCTAACGGTTTCTCTGCTAAGATTTATGCAACTGAAGCAACAACAAGAATTGGGCAGCTTATGATGGAGGATCTTGTTTCCATGCATAGTGAGTTCAAACAGTTTTATGGGCCACAGGATTCAGGGTGTGCCCAGTGGATGAAATGGGAAGAGCTTGACAAACTTCCACTTGTAATGCAAGAGATGATTTCAGGCAAAAATGGAACAGAATTGGGTGGTTGGTTGCCATTGTACAGTGCAGTTGATGTGAAGGATTGCATTCAGAAGGTGGAGTCACTTAAATATGCTCAAGAAACTTCTTATGGTGGCTCATTAATCATCAAAGCATTTAGCTCTGGTCTTGATATTGGCACATGTAACTGGGTGATAAGAAGTCCGAAAAGAGATGCTGCTGTCTTATCTAGCTCTGTGTTTGTCTCCCCTCAAGCAATGAACTTTGATCACCATTCTCTTCAAAACCATGATATTGTACTTTATTCAGATTTCTCATCTCTTAATGGTGGGGAAGCTGCTGAAGAAGATAACAATCACTCAACTTCAGTTCATGAAGACGCTCAGGGAGCATCTTTGGAATCATTGCTCAATGCTGATGAAAGTTTAGAGGAGGAGGAGAAGCTAGCATTTATCATTTTATGTGCTAATAATGCCCTTAAAATGGGCGGTTCAGTTTTGATCCCAATTGGTCGAATGGGAGTGGTTTTGCAATTGTTGGAGCACTTGTCATTTTCTCAGGAATTTTCAACTTTGAAGGTTCCCATATTTTTCATTTCTTCTGTTGCAGAAGAGCTGTTATCTTTCACCAATATCATACCAGAGTGGCTGTGCATGCAACGGCAGAAAAAGTTGTTTGCTGGTGAGCCATTATTTGCACATGTGAATTTCGTGAAAGAGAAGAAGCTCCATCTGCTTTCTTCAATCTGTGCACCTGATCTATTGAACATTTGGCAGGAACCATGCATAGTATTTACTCCTCACTGGAGCCTGCGGCTTGGGCCTGTTGTTCATTTTCTTCAGCGTTGGCGAGGCGATGAAAAGTCATTGCTTGTGCTAGAGAAAGGGCTGGATGCAGATCTTGCTCTTCTACCTTTTAAGCCTTTGGAAATGAAGGTCCTTCAATGTTCGTTCCTCTCTGGAATAAGATCAAGTAAAGTTGCACCATTGTTGGAGAGGTTGCAGCCAAAGTGTGTCCTGTTCCCTGAAGATTTGAGGACTCTGGGCATTCTGAAGGCAACATCATTCTCAACCATTTATTACTCTGAAAATGGCATGTTACGTGTACCCAGTCTGAAACAATGTGCAGAACTTGAGATTTCAACAGACTTAGCAACTCGTTTTCAGTGGATAAATTTGAGGGATGATGATATAAACATTGCAAGATTGAAGGGTGAGCTGAACGTTGAGCATGGAAAACATTGGTTACTCCCGGGTCCTGAGTCCAAGGAGATCTCAATCGATCTGGGAACGCTTTCGACAGTGTTGAATAGCAAGGGTATTAAAACATCTCTACGAAAAGCCACATGTGATGATGGGTCTAGCACCTCTATGTTAGATGTTGATGAACCTAGCAAGGCTGTGATAGAAGTGCACCCAAAAAGGATAGTGATAAGCACACATGACAAGCACTTGTCCTCCTGCATTTTTGAAGTTGTGGATAGCGTTTTTAGTGCCATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_85876.p1 GENE.R_Transcript_85876~~R_Transcript_85876.p1 ORF type:complete len:683 (+),score=149.33,Lactamase_B_6|PF16661.1|9e+02,Lactamase_B_6|PF16661.1|6.3e-09 R_Transcript_85876:206-2254(+)
MKLTCLSKGNGYHFPPCYILEIGGFRLLLDCPLDLSALAVFSPVPAYSDRKLEESFACECIISLDADSAAHKRQKSENSIDASDLIYDIPWYKTVCNLHLWDISFIDAVLISSPMGMLGLPFFTRANGFSAKIYATEATTRIGQLMMEDLVSMHSEFKQFYGPQDSGCAQWMKWEELDKLPLVMQEMISGKNGTELGGWLPLYSAVDVKDCIQKVESLKYAQETSYGGSLIIKAFSSGLDIGTCNWVIRSPKRDAAVLSSSVFVSPQAMNFDHHSLQNHDIVLYSDFSSLNGGEAAEEDNNHSTSVHEDAQGASLESLLNADESLEEEEKLAFIILCANNALKMGGSVLIPIGRMGVVLQLLEHLSFSQEFSTLKVPIFFISSVAEELLSFTNIIPEWLCMQRQKKLFAGEPLFAHVNFVKEKKLHLLSSICAPDLLNIWQEPCIVFTPHWSLRLGPVVHFLQRWRGDEKSLLVLEKGLDADLALLPFKPLEMKVLQCSFLSGIRSSKVAPLLERLQPKCVLFPEDLRTLGILKATSFSTIYYSENGMLRVPSLKQCAELEISTDLATRFQWINLRDDDINIARLKGELNVEHGKHWLLPGPESKEISIDLGTLSTVLNSKGIKTSLRKATCDDGSSTSMLDVDEPSKAVIEVHPKRIVISTHDKHLSSCIFEVVDSVFSAM*

Click here to download the sequence:
Link to NCBI Protein BLAST